TGF- Tumor Suppression Through A Lethal EMT
Transcriptomics Dataset
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General Information
AccessionGSE72069
TitleTGF- Tumor Suppression Through A Lethal EMT
DescriptionTGF- is a major tumor suppressor in gastrointestinal (GI) and squamous carcinomas, which exhibit frequent genetic inactivation of Smad4, a key TGF- signaling component. Apoptosis is implicated as an important mediator of the tumor suppressive function of TGF-, although this process remains poorly understood. To address this long-standing question, we dissected the tumor suppressive action of TGF- in nave pancreatic ductal adenocarcinoma (PDA) cells. Here we show that TGF-/Smad4 signaling triggers an EMT in Kras-mutant pancreatic progenitor cells but turns this process into a trigger of apoptosis by converting the progenitor cell transcription factor Sox4 from an enforcer of epithelial progenitor identity into an activator of apoptosis. This occurs as a result of the EMT-linked repression of the endodermal master regulator Klf5, which cooperates with Sox4 to promote epithelial progenitor identity, and loss of which unmasks a latent apoptotic transcriptional program driven by Sox4. By losing Smad4, Kras-mutant PDA cells avoid this fate and instead use Sox4 as a TGF--dependent enforcer of the epithelial progenitor cell state.
Landing Pagehttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE72069
RepositoryGene Expression Omnibus
Tools used to analyze the dataset

Dataset Accession

ARCHS4
Published September 2017
ARCHS4 provides access to gene counts from HiSeq 2000 and HiSeq 2500 platforms for human and mouse experiments from GEO ...
4645
Clustergrammer
Published October 2017
Web-based tool for visualizing and analyzing high-dimensional data as interactive and shareable heatmaps
4645
Canned Analyses generated with the dataset

Dataset Accession
Tool Name

Interactive heatmap visualization of RNA-seq dataset GSE72069
Highly interactive web-based heatmap visualization of the top 500 most variable genes in t...
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