RNA sequencing of pancreatic islets and islet-derived macrophages and endothelial cells modulated by vascular endothelial growth factor-A signaling
Transcriptomics Dataset
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General Information
AccessionGSE72546
TitleRNA sequencing of pancreatic islets and islet-derived macrophages and endothelial cells modulated by vascular endothelial growth factor-A signaling
DescriptionPancreatic islet endocrine cell and endothelial cell (EC) interactions mediated by vascular endothelial growth factor-A (VEGF-A) signaling are important for islet endocrine cell differentiation and the formation of highly vascularized islets. To dissect how VEGF-A signaling modulates intra-islet vasculature and innervation, islet microenvironment, and cell mass, we transiently increased VEGF-A production by cells. VEGF-A induction dramatically increased the number of intra-islet ECs but led to cell loss. After withdrawal of the VEGF-A stimulus, cell mass, function, and islet structure normalized as a result of a robust, but transient, burst in proliferation of pre-existing cells. Bone marrow-derived macrophages (Ms) recruited to the site of cell injury were crucial for the cell proliferation, which was independent of pancreatic location and circulating factors such as glucose. Identification of the signals responsible for the proliferation of adult, terminally differentiated cells will improve strategies aimed at cell regeneration and expansion.
Landing Pagehttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE72546
RepositoryGene Expression Omnibus
Tools used to analyze the dataset

Dataset Accession

ARCHS4
Published September 2017
ARCHS4 provides access to gene counts from HiSeq 2000 and HiSeq 2500 platforms for human and mouse experiments from GEO ...
4645
Clustergrammer
Published October 2017
Web-based tool for visualizing and analyzing high-dimensional data as interactive and shareable heatmaps
4645
Canned Analyses generated with the dataset

Dataset Accession
Tool Name

Interactive heatmap visualization of RNA-seq dataset GSE72546
Highly interactive web-based heatmap visualization of the top 500 most variable genes in t...
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