Physical interaction between mutant calreticulin and the thrombopoietin receptor is required for transformation of hematopoietic cells
Transcriptomics Dataset
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General Information
AccessionGSE74890
TitlePhysical interaction between mutant calreticulin and the thrombopoietin receptor is required for transformation of hematopoietic cells
DescriptionSomatic mutations in calreticulin (CALR) are present in approximately 40%% of patients with myeloproliferative neoplasms (MPN). However, the mechanism by which mutant CALR is oncogenic is unknown. Here, we demonstrate that a megakaryocytic-specific MPN phenotype is induced when mutant CALR is over-expressed in mice and that the thrombopoietin receptor, MPL is required for mutant CALR driven transformation. Whole transcriptome analysis reveals enrichment of STAT signatures in mutant CALR transformed cells and JAK2 inhibitor treatment abrogates STAT activation. Employing extensive mutagenesis-based structure-function analysis we demonstrate that thepositively charged amino acids within the mutant CALR C-terminus are required for cellular transformation through facilitating physical interaction between mutant CALR and MPL.Together, our findings elucidate a novel mechanism of cancer pathogenesis.
Landing Pagehttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE74890
RepositoryGene Expression Omnibus
Tools used to analyze the dataset

Dataset Accession

ARCHS4
Published September 2017
ARCHS4 provides access to gene counts from HiSeq 2000 and HiSeq 2500 platforms for human and mouse experiments from GEO ...
4645
Clustergrammer
Published October 2017
Web-based tool for visualizing and analyzing high-dimensional data as interactive and shareable heatmaps
4645
Canned Analyses generated with the dataset

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Tool Name

Interactive heatmap visualization of RNA-seq dataset GSE74890
Highly interactive web-based heatmap visualization of the top 500 most variable genes in t...
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