Whole eye transcriptome generated in Abca4-/-Rdh8-/- mice to identify changes in gene expression after light exposure
Transcriptomics Dataset
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General Information
AccessionGSE75470
TitleWhole eye transcriptome generated in Abca4-/-Rdh8-/- mice to identify changes in gene expression after light exposure
DescriptionRNA-Seq has revolutionized transcriptome profiling with precise identification of even low expressing and novel transcripts. Goal of the current study was to identify novel gene signatures/biological pathways which are expressed in the early stage after light exposure in our disease model to identify transcriptional mis-regulation followed by validation using quantitative reverse transcription polymerase chain reaction (qRTPCR) methods
Landing Pagehttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE75470
RepositoryGene Expression Omnibus
Tools used to analyze the dataset
Dataset Accession
Clustergrammer
Published October 2017
Web-based tool for visualizing and analyzing high-dimensional data as interactive and shareable heatmaps
4645
ARCHS4
Published September 2017
ARCHS4 provides access to gene counts from HiSeq 2000 and HiSeq 2500 platforms for human and mouse experiments from GEO ...
4645
Canned Analyses generated with the dataset
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Tool Name
Interactive heatmap visualization of RNA-seq dataset GSE75470
ARCHS4, Clustergrammer
Highly interactive web-based heatmap visualization of the top 500 most variable genes in t...
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