Deep Sequencing analysis of the total RNA state and the polyadenylation state of mRNAs in Scrambled or CNOT7 knockdown neurons
Transcriptomics Dataset
FAIR Metrics
0 evaluations
General Information
AccessionGSE88777
TitleDeep Sequencing analysis of the total RNA state and the polyadenylation state of mRNAs in Scrambled or CNOT7 knockdown neurons
DescriptionDifferential thermal elution over poly(U) agarose was used to identify mRNAs that underwent a change in their poly(A) tail following CNOT7 knockdown in cultured hippocampal neurons. Total RNA levels were also measured from both sets to identify changes in stability or expressions of mRNAs in the different cell types
Landing Pagehttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE88777
RepositoryGene Expression Omnibus
Tools used to analyze the dataset
Dataset Accession
Clustergrammer
Published October 2017
Web-based tool for visualizing and analyzing high-dimensional data as interactive and shareable heatmaps
4645
ARCHS4
Published September 2017
ARCHS4 provides access to gene counts from HiSeq 2000 and HiSeq 2500 platforms for human and mouse experiments from GEO ...
4645
Canned Analyses generated with the dataset
Filters  
Dataset Accession
Tool Name
Interactive heatmap visualization of RNA-seq dataset GSE88777
ARCHS4, Clustergrammer
Highly interactive web-based heatmap visualization of the top 500 most variable genes in t...
FAIR Evaluation
Sorry, you must be signed in to evaluate this object.