Exosomal short RNA sequencing experiments
Transcriptomics Dataset
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General Information
AccessionGSE89926
TitleExosomal short RNA sequencing experiments
DescriptionThe characterization of extracellular vesicular RNA (EV RNA) derived from nine cell types demonstrated the diversity of cell type specific RNA biotypes. A large proportion of these cell type specific RNAs are denoted by their processing into shorter versions of their full length structures as they function with the cells of origin. specific portions of annotated pre-miRNA, tRNA, YRNA and other RNAs within EVs. Our results also establish the cell state specific dynamicity in EV RNA distributions, qualifying one of the important aspects of communication. In addition, the study highlights both the temporal dynamics and spatial localization of intact EV RNA after transfer into a recipient cell, and their ability to elicit a wide range of transcriptional changes within them. We also demonstrated the cell type specificity in response from two different cell types, when exposed to the same EV RNA stimuli, underscoring the context dependent interpretation of the complex EV RNA message. In doing so, we shed light on a novel and under-appreciated medium of non-cell autonomous regulation of gene expression, through which cells in a complex multicellular organism may shape the transcriptional landscape of other cells and achieve synchronized functioning of involved cells in response to a certain micro-environment at the system level.
Landing Pagehttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE89926
RepositoryGene Expression Omnibus
Tools used to analyze the dataset

Dataset Accession

ARCHS4
Published September 2017
ARCHS4 provides access to gene counts from HiSeq 2000 and HiSeq 2500 platforms for human and mouse experiments from GEO ...
4645
Clustergrammer
Published October 2017
Web-based tool for visualizing and analyzing high-dimensional data as interactive and shareable heatmaps
4645
Canned Analyses generated with the dataset

Dataset Accession
Tool Name

Interactive heatmap visualization of RNA-seq dataset GSE89926
Highly interactive web-based heatmap visualization of the top 500 most variable genes in t...
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