General Information
| Description | A software toolkit for the analysis of spike-in controls for next generation sequencing |
| Homepage | http://www.sequin.xyz/software |
Publications
ANAQUIN: a software toolkit for the analysis of spike-in controls for next generation sequencing
Summary:
Spike-in controls are synthetic nucleic-acid sequences that are added to a user’s sample and constitute internal standards for subsequent steps in the next generation sequencing workflow.
The Anaquin software toolkit can be used to analyze the performance of spike-in controls at multiple steps during RNA sequencing or genome sequencing analysis, providing useful diagnostic statistics, data visualization and sample normalization.
Availability and Implementation
: The software is implemented in C ++/R and is freely available under BSD license. The source code is available from github.com/student-t/Anaquin, binaries and user manual from www.sequin.xyz/software and R package from bioconductor.org/packages/Anaquin
Contact:
anaquin@garvan.org.au or t.mercer@garvan.org.au
Supplementary information:
Supplementary data are available at Bioinformatics online.
Related Tools
BioBloom tools
Published August 2014
Fast, accurate and memory-efficient host species sequence screening using bloom filters
NRGsuite
Published August 2015
A PyMOL plugin to perform docking simulations in real time using FlexAID
LuciPHOr2
Published November 2014
Site localization of generic post-translational modifications from tandem mass spectrometry data
CopyNumber450kCancer
Published November 2015
Baseline correction for accurate copy number calling from the 450k methylation array
FAIR Evaluation
Sorry, you must be signed in to evaluate this object.
