AVIA v2.0
Computational Tool
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General Information
DescriptionAnnotation, visualization and impact analysis of genomic variants and genes
Homepagehttp://avia.abcc.ncifcrf.gov
Publications
AVIA v2.0: annotation, visualization and impact analysis of genomic variants and genes
Hue Vuong; Anney Che; Sarangan Ravichandran; Brian T. Luke; Jack R. Collins; Uma S. Mudunuri
Summary: As sequencing becomes cheaper and more widely available, there is a greater need to quickly and effectively analyze large-scale genomic data. While the functionality of AVIA v1.0, whose implementation was based on ANNOVAR, was comparable with other annotation web servers, AVIA v2.0 represents an enhanced web-based server that extends genomic annotations to cell-specific transcripts and protein-level functional annotations. With AVIA’s improved interface, users can better visualize their data, perform comprehensive searches and categorize both coding and non-coding variants.
Availability and implementation : AVIA is freely available through the web at http://avia.abcc.ncifcrf.gov.
Contact : Hue.Vuong@fnlcr.nih.gov
Supplementary information: Supplementary data are available at Bioinformatics online.
DOI: https://doi.org/10.1093/bioinformatics/btv200
Metrics:
3
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