General Information
| Description | A web analytics tool for the detection of variants from an assembly |
| Homepage | http://assemblytics.com |
Publications
Assemblytics: a web analytics tool for the detection of variants from an assembly
Summary:
Assemblytics is a web app for detecting and analyzing variants from a de novo genome assembly aligned to a reference genome. It incorporates a unique anchor filtering approach to increase robustness to repetitive elements, and identifies six classes of variants based on their distinct alignment signatures. Assemblytics can be applied both to comparing aberrant genomes, such as human cancers, to a reference, or to identify differences between related species. Multiple interactive visualizations enable in-depth explorations of the genomic distributions of variants.
Availability and Implementation:
http://assemblytics.com, https://github.com/marianattestad/assemblytics
Contact:
mnattest@cshl.edu
Supplementary information:
Supplementary data are available at Bioinformatics online.
Related Tools
RepeatExplorer
Published February 2013
A Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequen...
VarSim
Published December 2014
A high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications
RareVariantVis
Published June 2016
New tool for visualization of causative variants in rare monogenic disorders using whole genome sequencing data
When loss-of-function is loss of function
Published July 2017
Assessing mutational signatures and impact of loss-of-function genetic variants
FAIR Evaluation
Sorry, you must be signed in to evaluate this object.
