Biogem
Computational Tool
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General Information
DescriptionAn effective tool-based approach for scaling up open source software development in bioinformatics
Homepagehttp://www.biogems.info/howto.html
Publications
Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics
Raoul J.P. Bonnal; Jan Aerts; George Githinji; Naohisa Goto; Dan MacLean; Chase A. Miller; Hiroyuki Mishima; Massimiliano Pagani; Ricardo Ramirez-Gonzalez; Geert Smant; Francesco Strozzi; Rob Syme; Rutger Vos; Trevor J. Wennblom; Ben J. Woodcroft; Toshiaki Katayama; Pjotr Prins
Summary: Biogem provides a software development environment for the Ruby programming language, which encourages community-based software development for bioinformatics while lowering the barrier to entry and encouraging best practices.
Biogem, with its targeted modular and decentralized approach, software generator, tools and tight web integration, is an improved general model for scaling up collaborative open source software development in bioinformatics.
Availability: Biogem and modules are free and are OSS. Biogem runs on all systems that support recent versions of Ruby, including Linux, Mac OS X and Windows. Further information at http://www.biogems.info. A tutorial is available at http://www.biogems.info/howto.html
Contact: bonnal@ingm.org
DOI: https://doi.org/10.1093/bioinformatics/bts080
Metrics:
17
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