CLIP Tool Kit (CTK)
Computational Tool
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General Information
DescriptionA flexible and robust pipeline to analyze CLIP sequencing data
Homepagehttp://zhanglab.c2b2.columbia.edu/index.php/CTK
Publications
CLIP Tool Kit (CTK): a flexible and robust pipeline to analyze CLIP sequencing data
Ankeeta Shah; Yingzhi Qian; Sebastien M. Weyn-Vanhentenryck; Chaolin Zhang
Summary: UV cross-linking and immunoprecipitation (CLIP), followed by high-throughput sequencing, is a powerful biochemical assay that maps in vivo protein-RNA interactions on a genome-wide scale. The CLIP Tool Kit (CTK) aims at providing a set of tools for flexible, streamlined and comprehensive CLIP data analysis. This software package extends the scope of our original CIMS package.
Availability and Implementation: The software is implemented in Perl. The source code and detailed documentation are available at http://zhanglab.c2b2.columbia.edu/index.php/CTK.
Contact: cz2294@columbia.edu
DOI: https://doi.org/10.1093/bioinformatics/btw653
Metrics:
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