General Information
| Description | A R package to study, predict and simulate the diffusion of a signal through a temporal gene network |
| Homepage | http://www-math.u-strasbg.fr/genpred/spip.php?rubrique4 |
Publications
Cascade: a R package to study, predict and simulate the diffusion of a signal through a temporal gene network
Summary:
Temporal gene interactions, in response to environmental stress, form a complex system that can be efficiently described using gene regulatory networks. They allow highlighting the more influential genes and spotting some targets for biological intervention experiments. Despite that many reverse engineering tools have been designed, the Cascade package is an integrated solution adding several new and original key features such as the ability to predict changes in gene expressions after a biological perturbation in the network and graphical outputs that allow monitoring the spread of a signal through the network.
Availability and implementation:
The R package Cascade is available online at http://www-math.u-strasbg.fr/genpred/spip.php?rubrique4.
Contact:
fbertran@math.unistra.fr
Supplementary information:
Supplementary data are available at Bioinformatics online.
Related Tools
GECA
Published March 2012
A fast tool for gene evolution and conservation analysis in eukaryotic protein families
Functional Gene Networks
Published January 2015
R/Bioc package to generate and analyse gene networks derived from functional enrichment and clustering
CMIP
Published December 2016
A software package capable of reconstructing genome-wide regulatory networks using gene expression data
FAIR Evaluation
Sorry, you must be signed in to evaluate this object.
