General Information
| Description | An R package for identifying differentially expressed genes from RNA-seq data |
| Homepage | http://bioinfo.au.tsinghua.edu.cn/software/degseq |
Publications
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
Summary:
High-throughput RNA sequencing (RNA-seq) is rapidly emerging as a major quantitative transcriptome profiling platform. Here, we present DEGseq, an R package to identify differentially expressed genes or isoforms for RNA-seq data from different samples. In this package, we integrated three existing methods, and introduced two novel methods based on MA-plot to detect and visualize gene expression difference.
Availability:
The R package and a quick-start vignette is available at http://bioinfo.au.tsinghua.edu.cn/software/degseq
Contact:
xwwang@tsinghua.edu.cn; zhangxg@tsinghua.edu.cn
Supplementary information:
Supplementary data are available at Bioinformatics online.
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