DMINDA
Computational Tool
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General Information
DescriptionAn integrated web server for DNA motif identification and analyses
Homepagehttp://csbl.bmb.uga.edu/DMINDA/
Publications
DMINDA: an integrated web server for DNA motif identification and analyses
Qin Ma; Hanyuan Zhang; Xizeng Mao; Chuan Zhou; Bingqiang Liu; Xin Chen; Ying Xu
D DMINDA (NA otif dentification analyses) is an integrated web server for DNA motif identification and analyses, which is accessible at http://csbl.bmb.uga.edu/DMINDA/. This web site is freely available to all users and there is no login requirement. This server provides a suite of cis-regulatory motif analysis functions on DNA sequences, which are important to elucidation of the mechanisms of transcriptional regulation: (i) de novo motif finding for a given set of promoter sequences along with statistical scores for the predicted motifs derived based on information extracted from a control set, (ii) scanning motif instances of a query motif in provided genomic sequences, (iii) motif comparison and clustering of identified motifs, and (iv) co-occurrence analyses of query motifs in given promoter sequences. The server is powered by a backend computer cluster with over 150 computing nodes, and is particularly useful for motif prediction and analyses in prokaryotic genomes. We believe that DMINDA, as a new and comprehensive web server for cis-regulatory motif finding and analyses, will benefit the genomic research community in general and prokaryotic genome researchers in particular.
DOI: https://doi.org/10.1093/nar/gku315
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