General Information
| Description | Visualization and analysis of dynamic molecular interaction networks |
| Homepage | http://apps.cytoscape.org/apps/dynet |
Publications
DyNet: visualization and analysis of dynamic molecular interaction networks
Summary
: The ability to experimentally determine molecular interactions on an almost proteome-wide scale under different conditions is enabling researchers to move from static to dynamic network analysis, uncovering new insights into how interaction networks are physically rewired in response to different stimuli and in disease. Dynamic interaction data presents a special challenge in network biology. Here, we present DyNet, a Cytoscape application that provides a range of functionalities for the visualization, real-time synchronization and analysis of large multi-state dynamic molecular interaction networks enabling users to quickly identify and analyze the most ‘rewired’ nodes across many network states.
Availability and Implementation
: DyNet is available at the Cytoscape (3.2+) App Store ( http://apps.cytoscape.org/apps/dynet ).
Contact
: david.lynn@sahmri.com .
Supplementary Information
: Supplementary data are available at Bioinformatics online.
Related Tools
TVNViewer
Published May 2011
An interactive visualization tool for exploring networks that change over time or space
RESQUE
Published June 2012
Network reduction using semi-Markov random walk scores for efficient querying of biological networks
SiPAN
Published March 2015
Simultaneous prediction and alignment of protein–protein interaction networks
FAIR Evaluation
Sorry, you must be signed in to evaluate this object.
