EcoGene-RefSeq
Computational Tool
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General Information
DescriptionEcoGene tools applied to the RefSeq prokaryotic genomes
Homepagehttp://www.ecogene.org/refseq
Publications
EcoGene-RefSeq: EcoGene tools applied to the RefSeq prokaryotic genomes
Jindan Zhou; Andrew J. Richardson; Kenneth E. Rudd
Summary: EcoGene.org is a genome database and website dedicated to Escherichia coli K-12 substrain MG1655 that is revised daily using information derived from the biomedical literature and in-house analysis. EcoGene is a major source of annotation updates for the MG1655 Genbank record, one of only a few Genbank genome records that are updated by a community effort. The Reference Sequence (RefSeq) database, built by The National Center for Biotechnology Information, comprises a set of duplicate Genbank genome records that can be modified by the NCBI staff annotators. EcoGene-RefSeq is being developed as a stand-alone internet resource to facilitate the usage of EcoGene-based tools on any of the 2400 completed prokaryotic genome records that are currently available at the RefSeq database.
Availability: The web interface of EcoGene-RefSeq is available at http://www.ecogene.org/refseq.
Contact: krudd@med.miami.edu or j.zhou1@miami.edu
DOI: https://doi.org/10.1093/bioinformatics/btt302
Metrics:
5
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