ExpEdit
Computational Tool
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General Information
DescriptionA webserver to explore human RNA editing in RNA-Seq experiments
Homepagehttp://www.caspur.it/ExpEdit/
Publications
ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments
Ernesto Picardi; Mattia D'Antonio; Danilo Carrabino; Tiziana Castrignanò; Graziano Pesole
Summary: ExpEdit is a web application for assessing RNA editing in human at known or user-specified sites supported by transcript data obtained by RNA-Seq experiments. Mapping data (in SAM/BAM format) or directly sequence reads [in FASTQ/short read archive (SRA) format] can be provided as input to carry out a comparative analysis against a large collection of known editing sites collected in DARNED database as well as other user-provided potentially edited positions. Results are shown as dynamic tables containing University of California, Santa Cruz (UCSC) links for a quick examination of the genomic context.
Availability: ExpEdit is freely available on the web at http://www.caspur.it/ExpEdit/.
Contact: graziano.pesole@biologia.uniba.it
Supplementary information: Supplementary data are available at Bioinformatics online.
DOI: https://doi.org/10.1093/bioinformatics/btr117
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