General Information
| Description | Haplotype genealogy graphs based on the Fitch algorithm |
| Homepage | http://www.evoinformatics.eu/fitchi.htm |
Publications
Fitchi: haplotype genealogy graphs based on the Fitch algorithm
Summary
: In population genetics and phylogeography, haplotype genealogy graphs are important tools for the visualization of population structure based on sequence data. In this type of graph, node sizes are often drawn in proportion to haplotype frequencies and edge lengths represent the minimum number of mutations separating adjacent nodes. I here present Fitchi, a new program that produces publication-ready haplotype genealogy graphs based on the Fitch algorithm.
Availability and implementation:
http://www.evoinformatics.eu/fitchi.htm
Contact
: michaelmatschiner@mac.com
Supplementary information:
Supplementary data are available at Bioinformatics online.
Related Tools
pegas
Published February 2010
An R package for population genetics with an integrated–modular approach
FamLBL
Published May 2014
Detecting rare haplotype disease association based on common SNPs using case-parent triads
RENT+
Published December 2016
An improved method for inferring local genealogical trees from haplotypes with recombination
FAIR Evaluation
Sorry, you must be signed in to evaluate this object.
