GOHTAM
Computational Tool
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General Information
DescriptionA website for ‘Genomic Origin of Horizontal Transfers, Alignment and Metagenomics’
Homepagehttp://gohtam.rpbs.univ-paris-diderot.fr:8080/Data/bin/GOHTAM_bin.tgz
Publications
GOHTAM: a website for ‘Genomic Origin of Horizontal Transfers, Alignment and Metagenomics’
Sabine Ménigaud; Ludovic Mallet; Géraldine Picord; Cécile Churlaud; Alexandre Borrel; Patrick Deschavanne
Motivation: This website allows the detection of horizontal transfers based on a combination of parametric methods and proposes an origin by researching neighbors in a bank of genomic signatures. This bank is also used to research an origin to DNA fragments from metagenomics studies.
Results: Different services are provided like the possibility of inferring a phylogenetic tree with sequence signatures or comparing two genomes and displaying the rearrangements that happened since their separation.
Availability and implementation: http://gohtam.rpbs.univ-paris-diderot.fr/
Contact: patrick.deschavanne@univ-paris-diderot.fr; ludovic.mallet@jouy.inra.fr
Supplementary information: Supplementary data are available at Bioinformatics online http://gohtam.rpbs.univ-paris-diderot.fr:8080/Data/bin/GOHTAM_bin.tgz
DOI: https://doi.org/10.1093/bioinformatics/bts118
Metrics:
13
Canned Analyses generated by the tool
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