KMC 3
Computational Tool
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General Information
DescriptionCounting and manipulating k-mer statistics
Homepagehttp://sun.aei.polsl.pl/REFRESH/kmc
Publications
KMC 3: counting and manipulating k-mer statistics
Marek Kokot; Maciej Długosz; Sebastian Deorowicz
Summary: Counting all k-mers in a given dataset is a standard procedure in many bioinformatics applications. We introduce KMC3, a significant improvement of the former KMC2 algorithm together with KMC tools for manipulating k-mer databases. Usefulness of the tools is shown on a few real problems.
Availability and implementation: Program is freely available at http://sun.aei.polsl.pl/REFRESH/kmc.
Contact: sebastian.deorowicz@polsl.pl
Supplementary information: Supplementary data are available at Bioinformatics online.
DOI: https://doi.org/10.1093/bioinformatics/btx304
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