MADGene
Computational Tool
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General Information
DescriptionRetrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets
Homepagehttp://www.madtools.org
Publications
MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets
Daniel Baron; Audrey Bihouée; Raluca Teusan; Emeric Dubois; Frédérique Savagner; Marja Steenman; Rémi Houlgatte; Gérard Ramstein
Summary: MADGene is a software environment comprising a web-based database and a java application. This platform aims at unifying gene identifiers (ids) and performing gene set analysis. MADGene allows the user to perform inter-conversion of clone and gene ids over a large range of nomenclatures relative to 17 species. We propose a set of 23 functions to facilitate the analysis of gene sets and we give two microarray applications to show how MADGene can be used to conduct meta-analyses.
Availability: The MADGene resources are freely available online from http://www.madtools.org, a website dedicated to the analysis and annotation of DNA microarray data.
Contact: gerard.ramstein@univ-nantes.fr
Supplementary information: Supplementary data are available at Bioinformatics online.
DOI: https://doi.org/10.1093/bioinformatics/btq710
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