MCScanX-transposed
Computational Tool
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General Information
DescriptionDetecting transposed gene duplications based on multiple colinearity scans
Homepagehttp://chibba.pgml.uga.edu/mcscan2/transposed/
Publications
MCScanX-transposed: detecting transposed gene duplications based on multiple colinearity scans
Yupeng Wang; Jingping Li; Andrew H. Paterson
Summary: Gene duplication occurs via different modes such as segmental and single-gene duplications. Transposed gene duplication, a specific form of single-gene duplication, ‘copies’ a gene from an ancestral chromosomal location to a novel location. MCScanX is a toolkit for detection and evolutionary analysis of gene colinearity. We have developed MCScanX-transposed, a software package to detect transposed gene duplications that occurred within different epochs, based on execution of MCScanX within and between related genomes. MCScanX-transposed can be also used for integrative analysis of gene duplication modes for a genome and to annotate a gene family of interest with gene duplication modes.
Availability: MCScanX-transposed is freely available at http://chibba.pgml.uga.edu/mcscan2/transposed/.
Contact: wyp1125@gmail.com or paterson@plantbio.uga.edu
Supplementary information: Supplementary data are available at Bioinformatics online.
DOI: https://doi.org/10.1093/bioinformatics/btt150
Metrics:
3
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