General Information
| Description | Automated pipeline for protein peptide/ligand interaction prediction |
| Homepage | http://wanglab.ucsd.edu/MIEC-SVM |
Publications
MIEC-SVM: automated pipeline for protein peptide/ligand interaction prediction
Motivation:
MIEC-SVM is a structure-based method for predicting protein recognition specificity. Here, we present an automated MIEC-SVM pipeline providing an integrated and user-friendly workflow for construction and application of the MIEC-SVM models. This pipeline can handle standard amino acids and those with post-translational modifications (PTMs) or small molecules. Moreover, multi-threading and support to Sun Grid Engine (SGE) are implemented to significantly boost the computational efficiency.
Availability and implementation:
The program is available at http://wanglab.ucsd.edu/MIEC-SVM.
Contact
: wei-wang@ucsd.edu
Supplementary information
Supplementary data available at Bioinformatics online.
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