MSA-PAD
Computational Tool
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General Information
DescriptionDNA multiple sequence alignment framework based on PFAM accessed domain information
Homepagehttp://www.myexperiment.org/workflows/4549.html
Publications
MSA-PAD: DNA multiple sequence alignment framework based on PFAM accessed domain information
Bachir Balech; Saverio Vicario; Giacinto Donvito; Alfonso Monaco; Pasquale Notarangelo; Graziano Pesole
Summary: Here we present the MSA-PAD application, a DNA multiple sequence alignment framework that uses PFAM protein domain information to align DNA sequences encoding either single or multiple protein domains. MSA-PAD has two alignment options: gene and genome mode.
Availability and Implementation: MSA-PAD is available as a web application (https://recasgateway.ba.infn.it/) and as two Taverna workflows corresponding to two alignment modes (Gene mode: http://www.myexperiment.org/workflows/4549.html; Genome Mode: http://www.myexperiment.org/workflows/4551.html).
Contact: g.pesole@ibbe.cnr.it
Supplementary information: Supplementary data are available at Bioinformatics online.
DOI: https://doi.org/10.1093/bioinformatics/btv141
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