General Information
| Description | An integrated tool for the identification of miRNA–target interaction in plants |
| Homepage | http://bis.zju.edu.cn/MTide |
Publications
MTide: an integrated tool for the identification of miRNA–target interaction in plants
Motivation:
Small RNA sequencing and degradome sequencing (also known as parallel analysis of RNA ends) have provided rich information on the microRNA (miRNA) and its cleaved mRNA targets on a genome-wide scale in plants, but no computational tools have been developed to effectively and conveniently deconvolute the miRNA–target interaction (MTI).
Results:
A freely available package, MTide, was developed by combining modified miRDeep2 and CleaveLand4 with some other useful scripts to explore MTI in a comprehensive way. By searching for targets of a complete miRNAs, we can facilitate large-scale identification of miRNA targets, allowing us to discover regulatory interaction networks.
Availability and implementation:
http://bis.zju.edu.cn/MTide
Contact:
mchen@zju.edu.cn
Related Tools
miRDeep-P
Published July 2011
A computational tool for analyzing the microRNA transcriptome in plants
A wide repertoire of miRNA binding sites
Published September 2011
Prediction and functional implications
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