MetiTree
Computational Tool
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General Information
DescriptionA web application to organize and process high-resolution multi-stage mass spectrometry metabolomics data
Homepagehttps://github.com/NetherlandsMetabolomicsCentre/metitree/wiki
Publications
MetiTree: a web application to organize and process high-resolution multi-stage mass spectrometry metabolomics data
Miguel Rojas-Chertó; Michael van Vliet; Julio E. Peironcely; Ronnie van Doorn; Maarten Kooyman; Tim te Beek; Marc A. van Driel; Thomas Hankemeier; Theo Reijmers
Summary: Identification of metabolites using high-resolution multi-stage mass spectrometry (MSn) data is a significant challenge demanding access to all sorts of computational infrastructures. MetiTree is a user-friendly, web application dedicated to organize, process, share, visualize and compare MSn data. It integrates several features to export and visualize complex MSn data, facilitating the exploration and interpretation of metabolomics experiments. A dedicated spectral tree viewer allows the simultaneous presentation of three related types of MSn data, namely, the spectral data, the fragmentation tree and the fragmentation reactions. MetiTree stores the data in an internal database to enable searching for similar fragmentation trees and matching against other MSn data. As such MetiTree contains much functionality that will make the difficult task of identifying unknown metabolites much easier.
Availability: MetiTree is accessible at http://www.MetiTree.nl. The source code is available at https://github.com/NetherlandsMetabolomicsCentre/metitree/wiki.
Contact: m.rojas@lacdr.leidenuniv.nl or t.reijmers@lacdr.leidenuniv.nl
DOI: https://doi.org/10.1093/bioinformatics/bts486
Metrics:
4
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