PCIT
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General Information
DescriptionAn R package for weighted gene co-expression networks based on partial correlation and information theory approaches
Homepagehttp://cran.r-project.org/package=PCIT
Publications
PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches
Nathan S. Watson-Haigh; Haja N. Kadarmideen; Antonio Reverter
Summary: We make the PCIT algorithm, used for detecting meaningful gene–gene associations in co-expression networks, available as an R package. Automatic detection of a suitable parallel environment is used such that scripts are portable between parallel and non-parallel environments with no modification of the script.
Availability and implementation: Source code and binaries freely available (under GPL-3) for download via CRAN at http://cran.r-project.org/package=PCIT, implemented in R and supported on Linux and MS Windows.
Contact: nathan.watson-haigh@csiro.au
DOI: https://doi.org/10.1093/bioinformatics/btp674
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