General Information
| Description | A server for high-throughput comparison of protein binding site surfaces |
| Homepage | http://reccr.chem.rpi.edu/Software/pesdserv/ |
Publications
PESDserv: a server for high-throughput comparison of protein binding site surfaces
Summary:
Structure-based approaches complement ligand-based approaches for lead-discovery and cross-reactivity prediction. We present to the scientific community a web server for comparing the surface of a ligand bound site of a protein against a ligand bound site surface database of 106 796 sites. The web server implements the property encoded shape distributions (PESD) algorithm for surface comparison. A typical virtual screen takes 5 min to complete. The output provides a ranked list of sites (by site similarity), hyperlinked to the corresponding entries in the PDB and PDBeChem databases.
Availability:
The server is freely accessible at http://reccr.chem.rpi.edu/Software/pesdserv/
Contact:
brenec@rpi.edu
Related Tools
FTSite
Published November 2011
High accuracy detection of ligand binding sites on unbound protein structures
FAIR Evaluation
Sorry, you must be signed in to evaluate this object.
