Rknots
Computational Tool
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General Information
DescriptionTopological analysis of knotted biopolymers with
Homepagehttp://cran.r-project.org/web/packages/Rknots
Publications
Rknots: topological analysis of knotted biopolymers with
Federico Comoglio; Maurizio Rinaldi
Motivation: Rknots is a flexible R package providing tools for the detection and characterization of topological knots in biological polymers. The package is well documented and provides a simple syntax for data import and preprocessing, structure reduction, topological analyses and 2D and 3D visualization. Remarkably, Rknots is not limited to protein knots and allows researchers from interdisciplinary fields to analyze different topological structures and to develop simple yet fully custom pipelines.
Availability: Rknots is distributed under the GPL-2 license and is available from the CRAN (the Comprehensive R Archive network) at http://cran.r-project.org/web/packages/Rknots
Contact: federico.comoglio@bsse.ethz.ch
Supplementary Information: Supplementary data are available at Bioinformatics online.
DOI: https://doi.org/10.1093/bioinformatics/bts160
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