General Information
| Description | Fast and accurate tools for RNA 2D structure prediction using integer programming |
| Homepage | http://rna.naist.jp/ |
Publications
Rtips: fast and accurate tools for RNA 2D structure prediction using integer programming
Rtips
We present a web-based tool set for fast and accurate prediction of RNA 2D complex structures. comprises two computational tools based on integer programming, for predicting RNA secondary structures with pseudoknots and for predicting RNA–RNA interactions with kissing hairpins. Both servers can run much faster than existing services with the same purpose on large data sets as well as being at least comparable in prediction accuracy. The web server along with the stand-alone programs is freely accessible at http://rna.naist.jp/.
Related Tools
RactIP
Published September 2010
Fast and accurate prediction of RNA-RNA interaction using integer programming
IPknot
Published June 2011
Fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming
PETcofold
Published November 2010
Predicting conserved interactions and structures of two multiple alignments of RNA sequences
StatAlign 2.0
Published January 2013
Combining statistical alignment with RNA secondary structure prediction
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