General Information
| Description | A web tool for designing RNA-Seq experiments to measure differential gene expression |
| Homepage | http://euler.bc.edu/marthlab/scotty/scotty.php |
Publications
Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression
Motivation:
A common question arises at the beginning of every experiment where RNA-Seq is used to detect differential gene expression between two conditions: How many reads should we sequence?
Results:
Scotty is an interactive web-based application that assists biologists to design an experiment with an appropriate sample size and read depth to satisfy the user-defined experimental objectives. This design can be based on data available from either pilot samples or publicly available datasets.
Availability:
Scotty can be freely accessed on the web at http://euler.bc.edu/marthlab/scotty/scotty.php
Contact:
gabor.marth@bc.edu
Supplementary information:
Supplementary data are is available at Bioinformatics online.
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