TEQC
Computational Tool
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General Information
DescriptionAn R package for quality control in target capture experiments
Homepagehttp://www.bioconductor.org
Publications
TEQC: an R package for quality control in target capture experiments
Manuela Hummel; Sarah Bonnin; Ernesto Lowy; Guglielmo Roma
Summary: TEQC is an R/Bioconductor package for quality assessment of target enrichment experiments. Quality measures comprise specificity and sensitivity of the capture, enrichment, per-target read coverage and its relation to hybridization probe characteristics, coverage uniformity and reproducibility, and read duplicate analysis. Several diagnostic plots allow visual inspection of the data quality.
Availability and implementation: TEQC is implemented in the R language (version >2.12.0) and is available as a Bioconductor package for Linux, Windows and MacOS from www.bioconductor.org.
Contact: manuela.hummel@crg.es
DOI: https://doi.org/10.1093/bioinformatics/btr122
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