General Information
| Description | A bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data |
| Homepage | http://ndc.mayo.edu/mayo/research/biostat/stand-alone-packages.cfm |
Publications
TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data
Summary:
TREAT (Targeted RE-sequencing Annotation Tool) is a tool for facile navigation and mining of the variants from both targeted resequencing and whole exome sequencing. It provides a rich integration of publicly available as well as in-house developed annotations and visualizations for variants, variant-hosting genes and host-gene pathways.
Availability and implementation:
TREAT is freely available to non-commercial users as either a stand-alone annotation and visualization tool, or as a comprehensive workflow integrating sequencing alignment and variant calling. The executables, instructions and the Amazon Cloud Images of TREAT can be downloaded at the website: http://ndc.mayo.edu/mayo/research/biostat/stand-alone-packages.cfm
Contact:
Hossain.Asif@mayo.edu; Kocher.JeanPierre@mayo.edu
Supplementary information:
Supplementary data are provided at Bioinformatics online.
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