General Information
| Description | Identification of ribonucleoproteins and RNA-binding regions |
| Homepage | http://s.tartaglialab.com/new_submission/signature |
Publications
catRAPID signature: identification of ribonucleoproteins and RNA-binding regions
Motivation:
Recent technological advances revealed that an unexpected large number of proteins interact with transcripts even if the RNA-binding domains are not annotated. We introduce catRAPID signature to identify ribonucleoproteins based on physico-chemical features instead of sequence similarity searches. The algorithm, trained on human proteins and tested on model organisms, calculates the overall RNA-binding propensity followed by the prediction of RNA-binding regions. catRAPID signature outperforms other algorithms in the identification of RNA-binding proteins and detection of non-classical RNA-binding regions. Results are visualized on a webpage and can be downloaded or forwarded to catRAPID omics for predictions of RNA targets.
Availability and implementation:
catRAPID signature can be accessed at http://s.tartaglialab.com/new_submission/signature.
Contact:
gian.tartaglia@crg.es or gian@tartaglialab.com
Supplementary information:
Supplementary data are available at Bioinformatics online.
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DROP
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catRAPID omics
Published August 2013
A web server for large-scale prediction of protein–RNA interactions
MODexplorer
Published February 2013
An integrated tool for exploring protein sequence, structure and function relationships
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