General Information
| Description | Comprehensive gene tree-species tree reconciliation using parsimony |
| Homepage | http://mbb.univ-montp2.fr/MBB/download_sources/16__ecceTERA |
Publications
ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony
Summary
: A gene tree-species tree reconciliation explains the evolution of a gene tree within the species tree given a model of gene-family evolution. We describe ecceTERA, a program that implements a generic parsimony reconciliation algorithm, which accounts for gene duplication, loss and transfer (DTL) as well as speciation, involving sampled and unsampled lineages, within undated, fully dated or partially dated species trees. The ecceTERA reconciliation model and algorithm generalize or improve upon most published DTL parsimony algorithms for binary species trees and binary gene trees. Moreover, ecceTERA can estimate accurate species-tree aware gene trees using amalgamation.
Availability and implementation
: ecceTERA is freely available under http://mbb.univ-montp2.fr/MBB/download_sources/16__ecceTERA and can be run online at http://mbb.univ-montp2.fr/MBB/subsection/softExec.php?soft=eccetera.
Contact:
celine.scornavacca@umontpellier.fr
Supplementary information:
Supplementary data are available at Bioinformatics online.
Related Tools
MulRF
Published October 2014
A software package for phylogenetic analysis using multi-copy gene trees
STELLS2
Published February 2017
Fast and accurate coalescent-based maximum likelihood inference of species trees from gene tree topologies
Treelink
Published December 2015
Data integration, clustering and visualization of phylogenetic trees
FAIR Evaluation
Sorry, you must be signed in to evaluate this object.
