General Information
| Description | A database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data |
| Homepage | http://jilab.biostat.jhsph.edu/database/cgi-bin/hmChIP.pl |
Publications
hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data
Summary:
hmChIP is a database of genome-wide chromatin immunoprecipitation (ChIP) data in human and mouse. Currently, the database contains 2016 samples from 492 ChIP-seq and ChIP-chip experiments, representing a total of 170 proteins and 11 069 914 protein–DNA interactions. A web server provides interface for database query. Protein–DNA binding intensities can be retrieved from individual samples for user-provided genomic regions. The retrieved intensities can be used to cluster samples and genomic regions to facilitate exploration of combinatorial patterns, cell-type dependencies, and cross-sample variability of protein–DNA interactions.
Availability:
http://jilab.biostat.jhsph.edu/database/cgi-bin/hmChIP.pl
Contact:
hji@jhsph.edu
Supplementary Information:
Supplementary data are available at Bioinformatics online.
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