General Information
| Description | Targeted, integrative search of associations between DNA copy number and gene expression, accounting for DNA methylation |
| Homepage | http://cran.r-project.org/ |
Publications
tmle.npvi: targeted, integrative search of associations between DNA copy number and gene expression, accounting for DNA methylation
Summary:
We describe the implementation of the method introduced by Chambaz et al. in 2012. We also demonstrate its genome-wide application to the integrative search of new regions with strong association between DNA copy number and gene expression accounting for DNA methylation in breast cancers.
Availability and implementation:
An open-source R package tmle.npvi is available from CRAN (http://cran.r-project.org/).
Contact:
pierre.neuvial@genopole.cnrs.fr
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