General Information
| Description | An R package for the visualization and analysis of viral small RNA sequence datasets |
| Homepage | http://www.ark-genomics.org/bioinformatics/virome |
Publications
viRome: an R package for the visualization and analysis of viral small RNA sequence datasets
Summary:
RNA interference (RNAi) is known to play an important part in defence against viruses in a range of species. Second-generation sequencing technologies allow us to assay these systems and the small RNAs that play a key role with unprecedented depth. However, scientists need access to tools that can condense, analyse and display the resulting data. Here, we present viRome, a package for R that takes aligned sequence data and produces a range of essential plots and reports.
Availability and implementation:
viRome is released under the BSD license as a package for R available for both Windows and Linux http://virome.sf.net. Additional information and a tutorial is available on the ARK-Genomics website: http://www.ark-genomics.org/bioinformatics/virome.
Contact:
mick.watson@roslin.ed.ac.uk
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