!direction	0
!num_genes	500
!diffexp_method	chdir
!cutoff	500
!correction_method	None
!threshold	None
!organism	Mus musculus
!gene	FOXD3
!cell	Embryonic Stem Cells
!perturbation	Knockout
!disease	Pluripotency and Differentiation
!end_metadata
EGR1	0.139405
NANOG	-0.136111
FOS	0.111668
CTGF	0.109314
CSRP2	-0.108533
LGALS1	0.101693
UBC	0.096072
LRRC34	-0.087802
DPPA5	0.083955
DDIT4	0.083753
UPP1	-0.083721
DUSP1	0.083651
PGAM1	-0.082238
CCT5	-0.082160
CDH1	0.081794
LDHA	-0.081089
ERAS	-0.079655
USMG5	-0.079515
DUSP6	0.079274
F2R	0.079162
FAT1	0.078336
RPS9	0.077332
CD9	-0.077008
DNMT3B	0.074673
LEFTY2	-0.074625
MREG	-0.073887
DSTN	0.073768
NME2	0.069262
KLF4	-0.068316
ERH	-0.066792
DIS3	-0.066640
OOEP	-0.066245
ATP5H	-0.065828
GAPDH	-0.065232
SOX2	-0.064987
MAD2L1	0.063362
KRT18	0.063244
TPI1	-0.061798
ACADM	-0.061447
LAP3	-0.061260
MCL1	0.060249
HMGCS1	0.059892
KRT8	0.059888
COX5A	-0.059387
DKC1	-0.059331
NR0B1	-0.058962
MORC1	-0.058841
KLHL13	0.058744
GJA1	0.058654
TCL1A	-0.057737
CCNG1	0.056972
QDPR	-0.056912
RPL22	0.056753
NDUFA1	-0.056661
RYBP	-0.056040
ABCG2	0.055833
YWHAZ	-0.055697
APEX1	-0.055337
BRK1	-0.055282
BANF1	-0.055034
RBBP7	0.054982
CCRN4L	0.054818
THUMPD1	-0.054487
FKBP9	0.054465
NDUFA6	-0.054450
FBL	-0.053804
UQCRC2	-0.053595
CYC1	-0.053407
SUMO1	-0.052209
LDHB	-0.051972
ATF1	-0.051941
SAP30	-0.051436
GAB1	0.051296
MORF4L2	-0.050722
GTF2E2	0.050101
SKIL	0.050086
EMG1	-0.049714
HINT1	-0.049703
RPL36AL	-0.049489
FKBP3	-0.049455
TRIM28	-0.049375
MCM6	-0.048912
LGALS3	-0.048616
FEM1B	0.048223
TUBB2B	-0.047738
PSMC4	-0.047690
HSPE1	-0.047430
CKS2	-0.047311
PPP1CA	-0.047254
PCBP1	0.047089
RRM2	-0.046939
TP53INP1	0.046753
CTH	0.046548
HNRNPH2	-0.046448
SLC2A1	0.046318
DCTPP1	-0.045864
EIF4A2	0.044824
IFITM2	-0.044579
BHLHB9	-0.044548
NDUFB9	-0.044487
EIF2S2	-0.044456
SENP3	-0.044404
RPL4	0.044266
NGDN	-0.044125
GARS	0.043883
MSH6	-0.043781
SF3B6	-0.043774
SLC7A3	-0.043446
RPL27	-0.043338
NDUFB5	-0.042799
SEC13	-0.042755
PSMD12	-0.042452
POLR2I	-0.042333
UBA3	-0.041930
PPP4R2	-0.041835
CSTB	0.041798
FH	-0.041473
COX6B1	-0.041390
HK2	0.040894
RRS1	-0.040879
TUBA1A	0.040844
MKRN1	0.040681
MDH1	-0.040398
WSB1	-0.040180
DCAF13	-0.039849
RDM1	-0.039841
ATP5F1	-0.039828
ANXA3	0.039683
AKR1B1	0.039193
SLIRP	-0.038818
SOD2	-0.038749
SDHB	-0.038742
ACOT9	-0.038542
ACTB	0.038517
TCFL5	0.038279
S100A6	0.038256
RPL11	-0.038105
CTSV	0.038007
PLAC8	0.037753
NDUFA9	-0.037719
RPL10A	-0.037454
EIF5A	-0.037446
NDUFV1	-0.037326
CCT7	0.037228
GCSH	-0.037204
EIF4A1	-0.037154
C14orf2	-0.037109
FAU	-0.036839
RPS7	-0.036807
MYLPF	-0.036768
SUMO2	-0.036373
CHCHD2	0.036343
TIMM23	-0.036248
LAMTOR5	-0.036246
HMGN1	0.036132
C1QBP	-0.036096
PTP4A2	0.035994
EIF3E	-0.035852
CYCS	0.035795
CACYBP	-0.035780
NACA	-0.035752
DDX39A	-0.035597
HNRNPF	-0.035583
HNRNPU	-0.035531
RPA3	-0.035499
ATP6AP2	-0.035454
LSM3	0.035448
FAM103A1	-0.035443
POLR2K	0.035431
AMD1	0.035370
RAD21	-0.035246
PSMB6	-0.035146
PAIP2	0.035017
AHCY	-0.034960
VDAC1	-0.034761
SERPINE2	0.034704
ASNSD1	-0.034533
BEX4	-0.034458
IDH3G	-0.034418
EMC2	-0.034384
POU5F1	-0.034288
PSMB5	-0.033839
NDUFS1	-0.033670
RPL18A	-0.033650
IGFBP2	-0.033638
DNAJC15	-0.033617
PHF11	-0.033561
S100A10	-0.033487
HPRT1	-0.033328
PHB2	-0.033242
EED	-0.033213
CBX3	0.033201
SIRT1	-0.033081
RPL15	-0.033046
UBALD2	-0.033002
MRPL12	-0.032610
ACTL6A	-0.032515
NDUFA8	-0.032438
RPS23	0.032417
PLRG1	-0.032378
RPL7	-0.032304
JAGN1	-0.032158
DNAJC7	-0.032135
RPL13A	-0.032022
LYZ	0.031927
PHLDB2	0.031821
KDM1A	0.031778
NAA38	-0.031754
TAGLN	0.031654
NFATC2IP	-0.031568
TPT1	0.031516
POU4F2	-0.031493
PSMC5	-0.031438
TMEM131	-0.031399
CNBP	0.031313
NHP2L1	-0.031179
YWHAE	-0.031128
UBA2	-0.031081
SUGT1	-0.031051
B2M	0.030935
PPIB	0.030860
SEPP1	0.030796
PNN	-0.030701
DEK	0.030657
SNRPD1	-0.030652
GPX1	-0.030553
PIK3CD	0.030518
PBK	-0.030500
PPP1CB	-0.030499
RAB1A	-0.030152
RPS4Y1	0.030083
DDX17	-0.030069
CDC5L	-0.029949
ABCC4	0.029862
PRMT1	-0.029824
RPS8	0.029782
GLUL	-0.029744
RBMS1	0.029719
SUB1	-0.029706
NAF1	0.029608
SERPINE1	0.029566
BNIP3	0.029465
AIMP1	-0.029395
BCCIP	-0.029306
PTGR1	0.029256
DARS	-0.029224
H2AFZ	-0.029205
PIM1	0.029148
RARS	-0.029098
SHFM1	-0.029061
NHP2	-0.029059
ARL6IP1	-0.028916
SUCLG1	0.028914
COMMD1	-0.028717
SMDT1	-0.028637
MAGOHB	0.028610
PABPN1	-0.028540
PSMD6	-0.028527
TMEM126A	-0.028515
ATP5G1	-0.028489
RBPMS2	0.028457
DPY30	-0.028224
SSR2	-0.028220
SCPEP1	-0.028201
PHLDA2	-0.028117
FABP5	-0.028094
MTF2	0.028066
SKP1	-0.028035
EPB41L4A	-0.027923
DAP3	-0.027893
TMEM256	-0.027892
MCM4	-0.027831
ACTN4	0.027735
BMP4	-0.027729
FCF1	-0.027725
JARID2	0.027696
H2AFV	-0.027656
LUC7L3	-0.027607
AJUBA	0.027604
PKP2	0.027596
VDAC2	-0.027537
C9orf41	-0.027499
PSMC3	-0.027484
MYL12B	0.027439
GSTP1	-0.027394
TARS	-0.027312
IER3	0.027270
NDUFV2	-0.027266
NDUFB8	-0.027220
PBDC1	-0.027209
DDX1	-0.027118
NDUFS6	-0.027095
ENAH	-0.026995
C4orf27	0.026978
SOCS3	-0.026965
ETFB	-0.026896
CCNB1IP1	-0.026889
NDUFB11	-0.026853
MAK16	0.026762
EMB	0.026738
PSMB4	-0.026725
FIGNL1	-0.026687
ANXA1	0.026658
BTF3	-0.026611
INHBB	-0.026565
NDUFB3	-0.026375
CRBN	-0.026335
TCF15	0.026235
AKAP12	0.026123
PTPLB	0.026106
SAMM50	-0.026069
MRPL22	-0.026060
FZD5	-0.026030
CENPV	-0.025991
TMEM230	0.025991
SNRNP27	0.025950
MTPN	0.025777
SLC7A5	0.025759
DDX3X	-0.025759
CHCHD1	-0.025670
ALDOA	-0.025658
RANGRF	-0.025611
UFSP2	0.025537
HNRNPM	-0.025487
TNS3	-0.025404
NDUFA5	-0.025353
ARL8B	-0.025321
IVNS1ABP	-0.025250
HDAC2	-0.025250
MTM1	0.025224
NDUFA13	0.025211
AARD	-0.025032
ADK	0.024958
TRNT1	-0.024903
RNASEH2B	-0.024821
PTPRF	0.024789
SLC25A40	0.024784
SLC25A4	-0.024776
EIF4E2	-0.024764
FTL	0.024761
TMEM50A	0.024646
MRPS33	0.024550
GADD45A	0.024477
THBS1	0.024448
RPL18	-0.024399
SRSF6	-0.024392
MRPS28	-0.024330
COL18A1	0.024330
PRPF19	-0.024327
H2AFX	0.024322
C6orf203	0.024270
NEUROD1	0.024243
CEP55	-0.024227
EPCAM	0.024070
USP39	0.024051
CFDP1	0.023995
PRDX1	0.023945
ATP5O	-0.023936
SNRPD2	-0.023930
TDGF1	-0.023925
LIG1	-0.023915
JMJD1C	0.023907
VIM	-0.023895
KLF10	-0.023857
SERBP1	0.023833
PMM1	-0.023818
CLDN7	0.023789
RBBP5	-0.023716
NPL	0.023553
DPPA4	0.023527
NDUFS8	-0.023511
UFC1	-0.023506
EXOSC5	-0.023388
NDUFS2	-0.023363
ENC1	0.023341
PSMA6	-0.023283
MRPL30	-0.023270
PLIN2	0.023221
PPP2CA	-0.023218
RPS24	-0.023184
TFCP2L1	-0.023157
PNO1	-0.023109
FAM162A	0.023095
PRDM14	-0.023059
POLR2G	-0.023053
BRD2	0.023051
SYCE2	0.022977
FASTKD2	-0.022931
MANBA	-0.022912
UTP18	-0.022856
NOP58	-0.022854
LY75	-0.022824
MZT1	-0.022802
TCP1	0.022795
TSEN34	-0.022742
UBXN1	-0.022677
ACTG1	0.022599
CASP8AP2	-0.022582
NDUFS3	-0.022560
CKB	-0.022558
DEGS1	-0.022542
XRCC5	-0.022491
ESRP1	0.022424
HIRIP3	-0.022376
GDF3	-0.022351
EIF3F	-0.022313
ATP6V1C1	-0.022257
NUBPL	-0.022242
MED30	-0.022181
HSPA5	0.022171
SLBP	0.022143
SAT1	-0.022081
DDX5	-0.022080
EIF3D	-0.022044
TXNDC17	-0.021981
ZFP42	0.021963
PSMC6	-0.021913
RPS29	0.021760
SEC61B	-0.021696
MDH2	0.021694
PSMB3	-0.021640
MRPS35	-0.021586
AMOTL2	0.021568
ATP6V1D	-0.021545
DDX3Y	0.021537
PARP1	-0.021501
RPS6KA6	-0.021457
MCM5	-0.021408
GTSF1L	-0.021405
COX4I1	-0.021382
SLC35G1	-0.021374
EEF1D	-0.021208
KDM2B	0.021199
SEC61G	-0.021146
BRIX1	-0.021143
CNN2	0.021141
WASF2	0.021103
SNRNP25	-0.021075
GLUD1	0.021024
ATP5C1	-0.021020
GJB3	-0.021013
TRIM25	0.020944
PSMC2	-0.020887
CHCHD4	0.020858
MCM2	0.020845
HMGB2	0.020795
NCL	-0.020788
MRPS16	-0.020723
POLD2	-0.020676
PSMG1	-0.020623
ADSS	-0.020555
MYEOV2	-0.020502
RPS17	-0.020468
SFPQ	-0.020457
HADH	-0.020449
HAX1	0.020432
NSMCE1	-0.020382
DAD1	-0.020307
UBE2A	-0.020269
RBM45	-0.020254
ARMCX1	-0.020254
NDUFS7	-0.020237
C2orf88	-0.020235
EIF2A	-0.020172
RBBP4	0.020167
MFGE8	-0.020146
LAPTM4B	-0.020111
PSMA5	-0.020110
RPS13	-0.020096
WTAP	-0.020079
PCNA	-0.020056
EEF1B2	-0.020020
UQCRB	-0.020009
AIFM1	-0.020006
AASS	0.019965
CETN3	-0.019854
AKR1A1	0.019831
RNPS1	0.019807
PRTG	0.019792
MTHFD2	0.019791
PIN4	-0.019737
CALR	0.019711
SLC25A5	-0.019708
ESRRB	-0.019664
RPL23	0.019634
ADSL	-0.019625
EMP1	-0.019623
MSMO1	0.019547
KLF5	-0.019503
CLN5	-0.019502
RPS19	-0.019454
FAM117A	0.019441
NDUFV3	-0.019436
HEBP1	-0.019431
ADAM9	0.019396
ACTR2	-0.019375
PPIA	-0.019359
RAD1	-0.019355
TBCB	-0.019343
TMEM64	-0.019331