!direction	0
!num_genes	500
!diffexp_method	chdir
!cutoff	500
!correction_method	None
!threshold	None
!organism	Homo sapiens
!organism	Homo sapiens
!cell	MCF10A
!perturbation	ErbB2-engineered
!time	3D culture
!gene	ERBB2 (HER2)
!entrez gene	2064
!disease	Breast cancer
!end_metadata
SRGN	0.140788
CXCL8	0.124158
IL1B	0.114315
IER3	0.108608
S100A4	0.097925
FABP4	0.096120
ZFP36	0.086228
LEPREL1	-0.083389
IL6	0.081744
SERPINE2	0.081642
ADM	0.081147
CXCL2	0.079900
S100A14	-0.079728
TP63	-0.077041
KRT17	-0.076514
HIST2H2AA3	0.074967
CKMT1A	-0.074370
KRT15	-0.074304
IRF1	0.073991
CDH3	-0.072933
C1orf106	-0.070827
CDH1	-0.068472
COL17A1	-0.067883
TRIB1	0.067736
CLCA2	-0.066844
ZC3H12A	0.066459
ALOX5AP	0.065371
TXNIP	-0.064907
PI3	0.064566
TNFAIP3	0.063906
RASL11B	-0.062071
HSD17B2	-0.061936
CXCL1	0.061658
PNLIPRP3	-0.060981
LCP1	0.060605
C10orf90	0.059914
GFPT2	0.059325
PPP1R14C	-0.058378
PCOLCE2	0.058198
VASN	0.057983
DUSP1	0.057274
CKMT1B	-0.056933
AKR1B1	0.056752
HLA-B	0.056663
KRT14	-0.056148
DHRS3	-0.055867
HES1	0.055160
HIST2H2AC	0.054566
CYP1B1	0.054181
FPR1	0.054159
BHLHE40	0.052097
PHLDA1	0.051717
S100A2	-0.051704
TMEM158	0.051186
VCAN	0.050939
DDIT4	0.050780
HLA-DRA	0.050589
ERVMER34-1	-0.050477
IRF6	-0.050417
FOS	0.050249
MAFB	0.049974
AOX1	0.049473
DSG3	-0.049242
MUC1	0.049091
SLC7A5	-0.049080
CA12	-0.048790
HLA-DPA1	0.048173
IFI27	0.048078
ABCC2	0.047967
BCYRN1	0.047872
TXNRD1	0.047631
SCNN1G	-0.047112
KLF2	0.045892
SH2B3	0.045873
KIAA1211L	-0.045184
SLC27A3	-0.045181
GLRX	0.045178
TIMP3	-0.044844
DFNA5	-0.044557
CYSTM1	0.044457
DUSP6	0.044310
ACOT11	-0.043556
CCL20	0.043251
PAPPA	0.042991
CD70	0.042974
APCDD1L	0.042796
MTSS1	-0.042401
S100P	0.042293
FHOD1	0.042275
CIDEC	0.042235
HIST1H4H	0.041835
CDS1	-0.041831
CSF1R	-0.041756
RGL1	0.041676
NOV	0.041449
PLAT	-0.041392
SNAR-A1	0.040990
COL7A1	-0.040916
IL1A	0.040661
JUN	0.040639
SQSTM1	0.040550
HCP5	0.039796
CXXC5	0.039583
ADAP1	-0.039467
DCN	0.038841
RAB7B	-0.038776
PRRG2	-0.038592
GJB2	-0.038533
EFEMP1	-0.038421
ANTXR2	0.038410
PRSS8	-0.038367
MMD	0.038217
F3	0.038139
AMTN	-0.037782
TAP1	0.037340
H2AFY2	-0.037128
PLAU	0.036988
CDH2	0.036860
ANPEP	0.036693
FAM212A	-0.036602
GALK1	0.036230
CD82	-0.036131
IKBKG	0.035653
NRP1	0.035331
CD163L1	0.035225
PKP2	-0.035177
CEBPD	-0.035131
RNF144B	-0.035122
COBLL1	-0.035092
IGFBP7	-0.035015
CSF3	0.034792
EPHA2	0.034584
PERP	-0.034548
IRF9	0.034371
VARS2	-0.034242
MAL2	-0.034193
SLC3A2	-0.034142
CITED4	0.034133
ADAMTSL4	0.034084
FRAT2	-0.033974
MAOA	-0.033968
RAB38	-0.033955
NAMPT	0.033863
SLCO4A1	0.033604
MMP28	-0.033495
PLXNB1	-0.033494
CTDSPL	-0.033423
MPZL2	-0.033366
STC1	0.033297
LAMA3	-0.033133
HIST1H1C	0.033003
IFI44L	0.032986
HIF1A	0.032928
IRX3	-0.032804
TRIM29	-0.032754
CCND1	0.032719
IFI44	0.032606
F12	-0.032580
STAT1	0.032523
NDE1	-0.032467
FERMT2	0.032395
LOX	-0.032323
HIST1H2BK	0.032277
AVPI1	-0.032197
ABLIM3	0.032191
CLCF1	0.032132
FTL	0.032067
DAAM1	-0.032031
ITGB2	0.031963
NUPR1	-0.031942
IRAK2	0.031819
GPAM	-0.031685
CSF2	0.031629
JAM3	0.031555
SLC20A1	0.031526
IRS2	-0.031523
SLC22A18AS	0.031513
TMEM245	0.031398
OVOL2	-0.031389
IL20RB	-0.031121
SNCA	-0.030978
SRPX	0.030741
SFN	-0.030705
ACTA2	0.030468
STC2	0.030424
PALLD	-0.030410
KRT8	0.030327
DEFB1	0.030311
SOX15	-0.030310
CITED2	-0.030152
CSTA	-0.030103
SH3PXD2A	-0.030028
SNCG	-0.029972
SERPINB5	-0.029893
FAT2	-0.029867
PLOD2	0.029859
SLC39A8	0.029791
S1PR3	0.029747
HLA-H	0.029704
TNNI2	-0.029697
MYOT	-0.029540
SLC22A4	0.029528
CD14	0.029522
TM4SF1	0.029446
CARD10	-0.029266
LYN	0.029245
ETS2	-0.029131
PLCH2	-0.029070
GRPEL1	0.029048
TMEM238	-0.028963
GSTO2	-0.028926
GSTP1	-0.028900
ANGPTL4	0.028869
CLDN7	-0.028732
ARHGDIB	0.028672
C15orf52	0.028599
PPP2R2C	0.028559
HIST1H2AC	0.028480
CFB	0.028313
ADORA2B	0.028205
SYT8	-0.028048
FAM167A	0.028035
HMOX1	0.027970
PROS1	0.027905
DCUN1D3	0.027899
JUP	-0.027898
SCNN1B	-0.027898
HSD11B1	0.027773
TCTEX1D2	-0.027691
SMOX	0.027578
TSPAN7	-0.027576
HIST2H2BE	0.027500
H2AFJ	0.027445
IFITM2	0.027365
HSD17B1	-0.027313
DSP	-0.027274
IER5	0.027145
DUSP5	0.027132
ELMO3	-0.027022
MFGE8	-0.026969
HSPB1	-0.026938
RNF24	0.026909
PLEKHG3	-0.026880
NCOA7	0.026756
FAM65B	0.026731
F11R	-0.026573
STOM	-0.026568
LYRM1	0.026524
RARRES3	0.026486
RGS17	0.026482
TSPAN5	0.026384
PRRX2	-0.026352
SPATS2L	-0.026307
CTDSP2	-0.026197
PHLDA2	0.026069
TGOLN2	0.025925
CAPN1	-0.025896
CRIP2	-0.025744
CALU	0.025740
ALDH3A1	0.025684
RGCC	-0.025623
ZBED2	-0.025621
CSRNP1	0.025583
HLA-F	0.025545
FSTL1	0.025539
NNMT	0.025440
DSC3	-0.025394
INPPL1	0.025306
IFITM3	0.025262
CLIC2	0.025194
AKR1B10	0.025182
ST14	-0.025177
SYBU	0.025102
TPR	0.025092
FANCE	-0.025066
LAMC2	-0.025044
NABP1	0.025039
ADRB2	0.024982
FBN2	0.024965
ACADM	-0.024891
ACO1	0.024882
KDF1	-0.024863
WARS	0.024847
GLS	0.024812
AGPAT9	0.024789
RHOB	0.024761
UBE2L6	0.024718
SYTL1	-0.024638
BST2	0.024627
BCL2L1	0.024603
OAF	0.024600
CRYAB	0.024584
CAMK2N1	-0.024576
CDK5RAP2	0.024559
DPYD	0.024550
RAPGEFL1	-0.024507
KCTD14	0.024470
ENC1	0.024466
EMP3	0.024456
HLA-DMB	0.024406
CMBL	0.024401
C16orf74	-0.024393
TBL1X	0.024288
RIOK3	-0.024271
HNRNPA1P33	-0.024262
GLIPR2	0.024207
PHGDH	0.024193
MTURN	-0.024092
CD24	-0.024004
NRIP3	0.023986
BNIP3	0.023967
GPX8	0.023901
CACNB3	-0.023894
VIM	0.023856
NCEH1	0.023844
PDPN	-0.023826
HERC5	0.023816
POSTN	0.023782
ENG	0.023765
FGFR3	-0.023738
FAM213A	-0.023685
RALA	-0.023679
GM2A	-0.023675
LETM2	0.023649
MSRB1	0.023635
ZCCHC24	0.023629
RNF145	-0.023526
CTSC	-0.023513
INPP4B	-0.023494
CPVL	0.023421
SOX9	0.023412
FOSL1	0.023411
ALDH1A3	-0.023314
SPSB3	-0.023308
CUL4B	0.023230
UGDH	0.023201
CHN1	0.023198
FLNB	0.023095
TNFRSF12A	0.023085
GAREM	-0.023055
GBP2	0.023031
IFI6	0.023029
BASP1	0.022938
MAPK6	-0.022895
CADM3	0.022885
UGT1A6	-0.022868
GLT8D2	0.022865
KYNU	0.022844
STEAP1	0.022832
SFRP1	-0.022736
CYB5A	0.022640
TNFRSF6B	0.022616
SDC1	-0.022580
CELSR2	-0.022569
NSG1	-0.022563
SOD2	0.022558
HLA-DMA	0.022530
FAM216A	0.022502
GLDC	0.022449
BIK	-0.022434
FZD6	-0.022258
NUDT18	-0.022256
PLEKHA1	-0.022228
CUEDC1	0.022218
MIOS	-0.022098
SGPP2	-0.022093
CCDC89	0.022066
PODXL	0.022014
ZNFX1	0.021985
DPYSL3	0.021974
TNFAIP6	0.021958
DCBLD2	0.021954
EFNB2	0.021888
YRDC	0.021884
GBP1	0.021866
ALDH7A1	-0.021774
PRDM8	0.021773
SCPEP1	-0.021744
PDCD4	-0.021727
SRGAP3	-0.021715
LAD1	-0.021706
DOCK10	0.021685
BIRC3	0.021684
FRMD3	0.021675
TFCP2L1	-0.021673
ETS1	0.021662
GNE	0.021659
PLA2G16	0.021598
SSH3	-0.021424
ABCA12	-0.021373
TFAP2C	0.021344
ALCAM	-0.021337
ZBTB20	0.021284
CAP2	0.021250
MIDN	0.021230
MLLT11	0.021162
TRAK2	0.021099
GPR56	-0.021071
SPINT2	-0.021069
PPARG	0.021063
DRAM1	0.021005
PTPRM	0.020943
FAM46B	-0.020925
TST	0.020897
GPSM2	-0.020872
SERPINB1	0.020845
DKK1	-0.020750
KLF13	-0.020720
DENND5A	0.020711
RNF220	-0.020692
RAB17	-0.020689
CNN2	-0.020606
ZNF486	0.020584
FNBP1	0.020536
HLA-A	0.020527
QSOX1	0.020514
PLAGL2	-0.020447
TDRD9	0.020402
MLPH	0.020310
FERMT1	-0.020307
PEA15	0.020289
CD55	-0.020276
SKAP2	0.020262
HBP1	-0.020228
BLCAP	-0.020186
MAP7	-0.020186
NR2F1	0.020182
ARF5	-0.020159
MILR1	0.020099
ZCCHC11	-0.020080
OPLAH	-0.020050
HIP1	-0.020025
FJX1	0.019985
MAP3K8	0.019983
LGALS3BP	0.019973
CDR2L	-0.019970
ST3GAL5	0.019957
MGRN1	0.019947
RRS1	0.019945
TMED5	0.019899
CTGF	0.019888
EFNA1	0.019814
CTXN1	0.019764
HAUS4	-0.019728
ADCK2	-0.019700
TRIML2	0.019685
VPS51	-0.019674
FTH1P3	0.019673
DMKN	-0.019626
LITAF	-0.019615
BTG1	-0.019610
FAM136A	0.019558
IGF2BP3	0.019501
ACOX2	0.019465
AOC4P	0.019380
GPR68	-0.019370
MAP3K7CL	-0.019361
POR	0.019356
RASSF9	-0.019356
IMPDH2	-0.019355
LIPG	-0.019348
RERG	0.019348
TMEM171	0.019341
BAMBI	0.019340
LOC729603	0.019301
KCNQ3	0.019293
CDKN1A	0.019283
DHRS1	-0.019270
BMP1	0.019258
FBLN1	-0.019250
GK	-0.019208
MPRIP	0.019208
SMARCA1	0.019197
CBR3	0.019194
SPTSSA	0.019189
TRIB2	0.019171
TNC	0.019150
INSC	0.019126
HPCAL1	0.019099
FAIM3	-0.019094
DNAJA1	0.019086
ASB9	0.019083
EHD1	0.019070
RPIA	0.019041
BCL11A	-0.019035
RNASE7	-0.018980
SOCS2	0.018925
TSPAN13	-0.018925
XXYLT1	-0.018904
TNFAIP2	0.018871
IMPA2	-0.018815
CDC42SE2	-0.018812
VEGFC	0.018807
TMEM2	0.018782
DIS3L	-0.018765
ACSL1	0.018726
ARL2	-0.018724
ITGA5	0.018721
COQ10B	0.018712
NXN	-0.018692