!direction	0
!num_genes	500
!diffexp_method	chdir
!cutoff	500
!correction_method	None
!threshold	None
!organism	Homo sapiens
!cell	MCF7 Breast Cancer Cell
!perturbation	Retinoic acid receptor (knockdown)
!disease	Breast Cancer
!end_metadata
HLA-A	0.262790
IFI27	0.228361
HLA-C	0.197356
HLA-B	0.196334
HIST1H4C	-0.182065
IFI6	0.179668
IFITM3	0.156695
LCN2	0.156666
IFITM1	0.134927
IFITM2	0.125254
B2M	0.118801
HSPB1	0.113556
RPS4X	-0.106764
S100A11	0.102578
LGALS3BP	0.099988
IRX3	-0.096590
SERPINA3	0.095235
RPL3	-0.094141
NGFRAP1	-0.090536
ISG15	0.088872
IFIT1	0.086229
IER3	-0.079131
ACTB	0.078787
RPL9	-0.078471
RPL8	-0.077536
FTL	0.077031
CYP1B1	0.076910
HLA-G	0.074397
TMSB10	0.073840
RPS3A	-0.072802
EEF1G	-0.070226
PABPC3	-0.070149
TMEM14B	-0.069552
EPCAM	0.067415
RPL11	-0.066509
EEF1B2	-0.064738
RPS3	-0.063779
NPM1	-0.063010
ND2	0.061391
RPSA	-0.060908
UBC	0.060855
KRT19	0.060609
H2AFZ	-0.060542
RPS5	-0.057134
HMGB1	-0.056830
HLA-E	0.056507
TUBA1B	-0.055399
GNB2L1	-0.054500
CDK2AP1	0.053173
GSTM3	-0.052912
RPL7A	-0.052864
BCAS3	-0.052650
CD63	0.052583
NME1	-0.052010
BPIFA1	0.050547
MDK	0.050431
RPL39	-0.050337
RAN	-0.049857
S100P	0.048608
TMA7	-0.048190
HSPD1	-0.047996
RPS10	-0.047960
PSMC5	-0.047658
HSPA1A	0.047468
IFIT3	0.047416
CHCHD2	0.047403
HIST1H2BD	0.047221
COX1	-0.046908
LDHA	-0.046251
PRR13	0.046233
S100A9	0.045359
NACA	-0.044911
EEF2	-0.044451
GPRC5A	0.044063
ACTG1	-0.044025
TFF1	-0.043912
GLO1	-0.043741
MRFAP1	-0.043609
ENOPH1	-0.043470
ISOC1	-0.042732
AKR1C3	-0.042413
SLC12A2	0.042369
KPNA2	-0.042331
ATP5E	0.041875
HIST2H2BE	0.041781
GABARAP	0.041082
CEACAM6	0.040898
PSMA4	0.040851
HMGN3	-0.040051
VAMP8	0.039933
OAS1	0.039891
TUBA1A	0.039869
MIR21	0.039367
ANXA2	0.038821
RPS8	-0.038642
RPLP0	-0.038007
CSTB	0.037640
CKS2	-0.037359
RPL35	-0.037325
PFN1	0.037111
RPL36A	-0.036807
BST2	0.036793
CEBPB	0.036600
RPL12	-0.036457
NDUFB9	-0.036282
SNHG6	-0.035943
KLHDC2	0.035850
RPL7L1	-0.035807
ZFAS1	0.035427
RPS7	-0.035362
GRN	0.035218
PARK7	-0.035033
BCAS2	-0.034745
SAT1	0.034720
TRIM16	-0.034592
RNASEK	0.034448
TP53INP1	0.034252
S100A10	0.033822
ALDOA	0.033820
ARL6IP1	-0.033637
NDUFA13	0.033628
SLC25A5	-0.033575
C3orf14	-0.033349
HSPE1	-0.033173
UBB	0.033054
LGALS1	-0.033049
SHFM1	-0.033021
ATP9A	0.032966
UBE2L6	0.032739
DTX3L	0.032714
NQO1	-0.032512
SNRPG	-0.032413
CFB	0.032286
RPS18	-0.032043
DSP	0.031972
RAP1B	0.031965
RPL4	-0.031866
PTTG1	-0.031710
IRF9	0.031618
RPS27	0.031527
PSAP	0.031388
SOD1	-0.031162
HSPA8	-0.031136
TSPAN13	0.031037
SCUBE2	0.030643
TMED10	0.030410
SHISA5	0.030333
PSMC3	-0.030325
RPS14P3	0.030296
RPL13A	-0.030266
HINT1	-0.030265
HLA-F	0.030226
UBE2C	-0.030213
UQCRQ	-0.030081
MARCKSL1	0.029922
RPL41	-0.029875
TIMP1	0.029868
PRDX1	-0.029769
HDGF	-0.029637
XAF1	0.029532
RPL36AL	0.029440
DSTN	0.029392
RPL17	-0.029310
SH3BGRL	0.029231
ZWINT	-0.029213
ERP29	-0.029209
COX6C	-0.029191
PTPLAD1	-0.029037
THOC7	-0.028992
RPL34	-0.028928
C3	0.028834
SNRPE	-0.028817
SEC11A	-0.028766
ECHS1	-0.028523
PPA1	0.028423
TMBIM4	0.028421
ATP6V0D1	0.028421
RPL30	-0.028153
NELFCD	-0.027964
COX6B1	-0.027817
CMPK2	0.027719
PRDX6	-0.027512
FAM220A	-0.027318
SEP15	0.027269
PRR11	-0.027203
DDX5	0.027134
PRC1	-0.027100
ATP5J	-0.027044
SET	-0.027028
RPS6KB1	-0.026935
C14orf2	-0.026914
PSME2	0.026827
ZNF217	0.026764
HMGN2	-0.026760
IER2	0.026510
CCT3	-0.026483
STAT1	0.026344
GLRX5	-0.026182
BOD1	-0.026141
KIAA0101	-0.026034
ABRACL	0.026005
GGCT	-0.025841
TUBA1C	-0.025603
IRF2BPL	0.025553
PABPC1	-0.025512
MIR22HG	0.025425
ARPC2	0.025397
RRM2	-0.025227
RPS17	-0.025215
CMC2	-0.025187
PLSCR1	0.025174
CSTA	-0.025154
PEBP1	-0.025146
RPL28	0.025136
RPS25	0.025115
FBL	-0.025074
MTHFD1	-0.024914
PSMC1	-0.024814
GNG10	-0.024770
UCP2	0.024737
MAL2	0.024723
CIB1	0.024692
PSME1	0.024645
SNRPF	-0.024516
RAB1A	0.024441
DYNLT1	0.024407
GNAS	-0.024403
RPL35A	-0.024340
TKT	-0.024270
NDUFA12	-0.024237
IMPDH2	-0.024204
COX8A	-0.024144
KRT8	0.024049
SERINC5	0.023815
TRMT112	-0.023771
AQP3	0.023736
MYD88	0.023558
MRPS24	-0.023423
LGALS3	0.023408
PCNA	-0.023319
CAPNS1	0.023273
H2BFS	0.023272
MORF4L1	0.023220
BLOC1S2	-0.023183
CCT7	-0.023168
LASP1	0.023126
MYL6	-0.023016
EEF1A1	-0.022981
MT2A	-0.022926
NDUFA1	-0.022911
PTGES3	-0.022839
RAD21	-0.022632
ATP6AP1	0.022603
NMD3	0.022528
ZDHHC7	0.022479
CBX1	-0.022467
AMIGO2	0.022438
SPPL2A	0.022338
TPI1	-0.022259
SNHG8	-0.022234
ETFA	-0.022214
RPS23	-0.022194
LDOC1	0.021877
POLR2J	-0.021838
SNHG19	-0.021684
RPL29	-0.021573
C14orf119	-0.021542
UNG	-0.021508
RPS13	0.021431
NFKBIA	-0.021392
ADAR	0.021379
PSMA6	-0.021299
PSMB8	0.021291
HMGN1	0.021264
GMFB	-0.021204
CBWD1	-0.021173
RPS19	0.021145
TMBIM6	0.021100
RPS11	0.020962
PIAS3	0.020902
ARMCX6	-0.020854
VIMP	-0.020836
YWHAZ	-0.020830
GINS1	-0.020801
CKS1B	-0.020697
GDI2	-0.020653
MALL	0.020637
NAP1L1	-0.020622
RPL32	-0.020594
CCNG1	0.020474
HILPDA	-0.020440
FUCA2	0.020350
RTN4	0.020302
NMI	0.020221
PAPSS2	0.020126
HLA-DRB1	0.020115
CD164	0.020087
RAB25	0.020066
OAS3	0.020004
CUTA	-0.019974
USP11	0.019972
CYC1	-0.019811
TOM1L1	-0.019809
GSTO1	-0.019806
PHB2	-0.019796
DDIT4	0.019786
RPS12	-0.019767
UBE2S	-0.019691
C6orf211	-0.019595
C1QBP	-0.019570
SRP14	0.019568
MYL12B	-0.019519
LMNB1	-0.019452
SLC25A6	-0.019437
SLC6A14	0.019408
SETD1B	-0.019397
HIST1H2AC	0.019341
AURKA	-0.019335
SLIRP	-0.019331
STARD3NL	-0.019308
SLC25A3	-0.019301
MDH2	0.019273
MGST1	0.019259
AHCY	-0.019256
CDK4	-0.019241
PDLIM1	0.019209
DAZAP2	0.019174
MUC1	0.019125
CLDN7	0.019058
NEAT1	0.019005
WRB	-0.018986
MIF	-0.018974
DHRS3	0.018933
PPIC	0.018932
SERF2	-0.018929
TATDN1	-0.018831
ABCG2	-0.018825
MRPL3	-0.018747
RAB13	-0.018707
TMEM106C	-0.018617
ATP6V0E1	0.018595
MX1	0.018587
PAIP2	0.018554
DNAJA1	0.018452
PSMC6	-0.018372
ZNF146	-0.018344
UQCRH	-0.018342
NDUFAB1	0.018308
SSB	-0.018301
CEACAM5	0.018291
BRIP1	-0.018252
DPY30	-0.018245
BAG3	-0.018155
DHCR24	0.018147
PPDPF	0.018112
RPL22	-0.018040
DHX40	-0.018035
TAP1	0.018010
SMIM19	-0.018004
HSP90AB1	-0.017970
RPL6	-0.017800
PRKAR1A	-0.017789
CYP1A1	-0.017714
GMNN	-0.017623
DUT	-0.017622
IER5	-0.017620
ATP6	-0.017580
EBPL	-0.017548
CERS2	0.017537
NOP10	-0.017442
RPL19	0.017410
SRP68	-0.017348
ADI1	-0.017328
SPINT2	0.017328
SLC31A2	-0.017321
RPL15	-0.017318
ARF4	0.017244
KRT18	-0.017213
PPP3CA	0.017204
UBA52	0.017137
BRI3	-0.017073
RPS6	-0.016975
RDX	0.016961
HMGB3P1	-0.016942
TUBB	-0.016909
GAS5	-0.016889
RPL22L1	-0.016847
ATP1B1	-0.016766
S100A14	0.016753
RAD51C	-0.016726
GPD1L	0.016676
ZNFX1	0.016674
FTH1P5	0.016670
EGR1	0.016631
SLC39A6	-0.016626
RAD23B	-0.016619
PARP12	0.016584
SP110	0.016537
AKR1C2	-0.016513
MT1X	-0.016493
SNRPB	-0.016474
RPL23A	-0.016440
PTDSS1	-0.016437
NPC2	0.016411
TNFRSF12A	0.016404
IFI30	0.016398
LAMTOR1	-0.016397
TFF3	-0.016388
ATP6V1G1	0.016293
MDH1	-0.016285
P4HB	0.016229
MGAT4B	0.016228
HMGB2	-0.016224
UBE2T	-0.016209
STARD7	-0.016183
ARPC1A	0.016165
STRA13	-0.016063
CD81	0.016052
ERH	-0.016046
TMEM14C	-0.016026
SH3BP5	-0.016012
RPL14	-0.016005
RPL13	-0.015993
DNAJC15	-0.015894
MYO1B	0.015790
ST3GAL5	0.015748
CDKN3	-0.015743
AGR2	0.015732
UQCRFS1	-0.015732
EIF3H	-0.015703
CTBP2	0.015666
NOP58	-0.015637
PSMB10	0.015595
SEPHS2	-0.015554
TST	-0.015548
REEP5	0.015522
MBOAT1	0.015513
C1orf123	-0.015498
STT3A	-0.015483
RNASEH2A	-0.015442
LSM7	-0.015388
FEN1	-0.015368
GLB1	0.015327
XBP1	0.015314
ITGAE	-0.015291
LAP3	0.015240
KIAA1191	-0.015225
PFDN4	0.015142
AP2M1	0.015127
RPL36	-0.015097
TMEM123	0.015070
G6PD	0.015048
PTGER4	-0.015041
CLIC1	0.015018
HSP90B1	-0.015015
SOX4	0.014988
SNHG5	0.014979
CCNB1	-0.014907
AKR1C1	-0.014902
BAG1	-0.014897
S1PR3	-0.014897
MFSD1	0.014859
SF3B6	-0.014856
PMEPA1	0.014834
SARAF	0.014806
CDK1	-0.014748
LAPTM4B	0.014690
RPL18	-0.014662
PTMA	-0.014632
PHACTR2	0.014632
BPIFB1	0.014602
MRPS23	-0.014573
TOB1	0.014570
COX16	-0.014569
NCKAP1	0.014563
MRPL51	-0.014547
SLC38A2	-0.014541
ATP5L	-0.014492
UQCRB	-0.014459
SYNJ2BP	-0.014378
DEFB4A	0.014359
S100A16	0.014332
ATP5G1	-0.014320
CETN3	-0.014233
IRAK1	-0.014216
HLTF	-0.014211
CACYBP	-0.014206
CETN2	-0.014189
C20orf24	-0.014183
SAC3D1	-0.014163
ENO1	-0.014152
RPL10A	-0.014127
MRPL36	-0.014123
NAGK	0.014122
CXCL16	0.014121
HSD17B10	-0.014101
TERF2IP	-0.014092
CAMLG	-0.014052
SKA2	-0.014010
BIK	0.013983