!direction	0
!num_genes	500
!diffexp_method	chdir
!cutoff	500
!correction_method	None
!threshold	None
!organism	Homo sapiens
!organism	Homo sapiens
!cell	MCF10A 
!perturbation	miR2 
!time	3 day culture
!gene	PTPN11 (SHP2)
!entrez gene	5781
!disease	Breast cancer
!end_metadata
LTF	0.107442
KRT10	0.057310
CHRNA9	-0.056353
C1S	0.054440
ADH1B	0.049802
KRT16	0.049645
CCDC69	0.048628
SLC27A2	0.048246
CHI3L1	0.047579
ETS2	0.047045
PDK4	0.045998
TLR2	-0.045510
RHCG	-0.045323
C1R	0.044058
PRDM1	-0.043703
SAA2	0.043506
LOC441233	-0.043108
CYP1B1	0.042069
HTR1D	-0.041882
FBXO32	0.041684
SLC2A3	-0.040065
ACSL5	0.039176
CASP14	-0.038821
PRR15L	0.037362
ADAMTS6	-0.036811
SAA1	0.036756
EHF	0.036229
MSL3P1	-0.035704
SPRY4	-0.035546
MIR4697HG	-0.035196
SFTPD	0.034925
GABRA2	-0.034898
BTN3A3	0.034558
NT5E	-0.034259
GRAP	-0.033915
CFB	0.033453
SYN3	0.033387
FAM83A	-0.032980
PTTG3P	0.032585
ERBB3	-0.032344
GLUL	0.031672
KRT17	0.031660
CYFIP2	0.031398
GLDC	0.031377
CXADR	0.031207
MCF2	-0.031006
MAL2	0.030937
STC1	-0.030814
FTH1P3	0.030523
TSPAN1	0.030494
ABCC2	0.030486
GEM	-0.030480
CXCL2	-0.030430
B3GNT2	-0.030370
SERPINA3	0.030336
LEPREL4	-0.030316
SAA4	0.030246
TGFBR3	0.030225
KRT15	0.030151
INHBA	-0.030083
SERPINE1	-0.029890
AQP9	-0.029839
RP1	-0.029718
BCL6	0.029691
CD70	0.029685
RASL11B	0.029605
LINC01366	-0.029533
CASP1	0.029494
SPINK6	-0.029399
SH3RF2	0.029328
GBP2	0.029285
VLDLR	-0.029122
TACC2	0.028947
ETNK2	0.028933
EFNA1	0.028791
KCTD11	-0.028739
WNT5A	-0.028707
ADM	-0.028702
METTL7A	0.028636
IRS2	-0.028607
TMC4	0.028500
DCBLD2	-0.028441
EFNB2	-0.028415
PTPN11	-0.028379
EFEMP1	0.028372
ITPR1	-0.028370
MYO10	-0.028296
FN1	-0.028285
RPL23AP53	-0.028214
AKR1B10	0.028116
FAT2	0.028079
PLD5	-0.028073
OSBP2	-0.027972
NAV3	-0.027951
ERVH-4	-0.027888
ADH1C	0.027738
VSNL1	0.027549
PGM2L1	-0.027482
C10orf10	-0.027407
ZRSR1	0.027328
HAND1	-0.027237
ANGPTL4	-0.027185
SNORA22	0.027125
VEGFA	-0.026974
KRT14	0.026861
C2CD4B	-0.026650
CXCR1	0.026529
SKIL	-0.026379
RPSAP52	-0.026307
FAAH2	0.026277
LCE1C	0.025983
TGFA	-0.025982
F3	-0.025856
FXYD3	0.025833
TGM2	-0.025799
GCH1	0.025702
MAP4K4	-0.025692
PCDHB14	0.025664
CLMN	0.025610
BMP2	-0.025455
HS3ST3A1	-0.025455
IFITM1	0.025433
P4HA3	-0.025422
RNF144B	0.025372
TNFSF10	0.025333
MPRIP	-0.025291
HIST1H2BH	0.025162
MRGPRX3	-0.025120
NRIP1	-0.025072
MCF2L2	-0.025018
TLR3	0.024996
IL1B	-0.024921
FAM65B	0.024606
LRIG3	0.024484
KCNK5	0.024441
OR51A2	0.024423
IFNL3	0.024366
PTGER2	0.024355
KLF7	-0.024317
SEPP1	0.024288
AREG	-0.024269
DAW1	-0.024250
SPRR1B	0.024196
CDCP1	-0.024123
GPNMB	0.024055
PLAU	-0.024036
FAM20C	-0.024016
ORM1	0.023973
EGLN3	-0.023901
SLC1A3	0.023813
PDZK1IP1	0.023797
STK17A	-0.023748
STXBP5	-0.023684
CFHR4	-0.023678
GK	-0.023550
ENKUR	-0.023548
DNAJB5	-0.023511
RHOB	-0.023506
ANLN	-0.023465
MAB21L3	0.023444
SMAD5-AS1	0.023433
BTG2	0.023426
ADCK3	0.023424
CYP4X1	0.023419
SULT1B1	-0.023391
SAMD9	-0.023308
MIR600HG	-0.023266
PPARD	-0.023245
GPRC5C	0.023220
GPR19	0.023187
ANAPC10	-0.023156
KDM7A	-0.023084
SNORD60	0.023074
HSPA4L	0.023067
HEXA-AS1	0.023061
LGR4	0.023044
CD101	-0.023041
HMGA2	-0.022935
ITGA5	-0.022930
ALDH3A1	0.022876
MARCH9	0.022860
TUBB2A	-0.022853
GCNT4	-0.022852
EREG	-0.022807
BCAP29	-0.022787
IFI44L	0.022776
C10orf90	-0.022740
GDF15	0.022712
TRAK2	-0.022588
HIVEP1	0.022581
TMEM99	0.022572
BMP6	-0.022489
LCE3D	-0.022479
TSPAN5	-0.022456
SERPINB3	0.022433
ARHGAP31	-0.022420
APMAP	0.022407
TMEM194B	-0.022385
LRRC8C	-0.022362
THSD4	-0.022299
CCDC88C	0.022284
OAS1	0.022245
CAPRIN2	-0.022242
CCDC88A	-0.022218
IL1R1	0.022154
DMBT1	-0.022138
TRPC1	-0.022064
PSMB9	0.022055
SNAI2	-0.022017
FZD4	0.022017
SELENBP1	0.022014
SNORD116-11	0.022003
CD14	0.021991
DUSP4	-0.021963
NNMT	0.021955
FERMT2	-0.021933
TGM1	0.021846
SLAMF9	-0.021843
SGK1	0.021818
ANXA3	-0.021795
FARP1	-0.021764
MIR517C	0.021710
SORT1	0.021685
SLC26A2	-0.021676
TMEM156	-0.021640
HIST1H1B	0.021602
DEPTOR	0.021542
OR5P2	0.021541
LINC00935	-0.021516
SH2D2A	-0.021468
ATP2B4	-0.021446
NAV1	-0.021328
CCDC51	0.021321
SERPINB2	-0.021244
JMJD1C	-0.021219
PPL	0.021202
GPR88	-0.021161
INSM2	-0.021138
ZNF846	-0.021125
SNORA71A	0.021110
COX5B	0.021091
KCNJ15	-0.021043
ATP13A3	-0.021038
CFH	0.021022
N4BP2	-0.020979
ASS1	0.020960
TMCC1	-0.020930
HIST1H3B	0.020924
VAV3	0.020915
PMEPA1	-0.020877
MYO5A	-0.020873
FRMD4B	-0.020857
PRRG4	0.020852
SRGAP1	-0.020841
RASA1	-0.020827
FAP	0.020814
GMCL1P1	0.020807
ZNF257	0.020797
FAM111A	0.020775
RPL23AP32	-0.020766
ATP2C2	-0.020760
SNORA68	0.020712
TSC22D3	0.020653
ANTXR2	-0.020610
EGR1	-0.020609
CD300E	0.020605
RUFY2	-0.020571
ANKRD50	-0.020549
HILPDA	-0.020523
FBN1	-0.020518
CALM2	-0.020491
CTSV	-0.020464
KDELR3	-0.020453
LIPK	0.020448
MCM8	-0.020401
FANCE	0.020379
SCD5	-0.020360
IFITM3	0.020355
PCDHB4	-0.020337
HIST1H4D	0.020328
SULF1	0.020309
PPP1R14C	0.020245
FAM209B	-0.020205
SMTN	-0.020172
IRF1	0.020139
MUC7	-0.020048
IQSEC1	-0.020015
JUN	-0.020011
SPRR2A	0.019990
OR2L2	0.019979
INSC	-0.019969
TMEM135	0.019965
C1orf210	0.019948
ZNF25	-0.019938
PTPN12	-0.019931
HIST1H3H	0.019902
SLC16A8	-0.019884
C12orf75	-0.019868
RORC	0.019868
SHMT1	0.019842
HIST1H3F	0.019835
DUSP5	-0.019834
FZD2	0.019827
FLJ13744	-0.019821
PARM1	0.019820
LAMC2	-0.019773
VAT1L	0.019764
MAMLD1	-0.019733
CPEB4	-0.019716
HIST1H2AG	0.019685
ENO2	-0.019684
STOM	0.019680
ABHD6	0.019667
NGEF	-0.019664
GCNT1	-0.019659
SMPDL3B	0.019657
ZNF485	0.019649
CNKSR3	0.019648
CDO1	0.019648
IFI30	0.019642
LAMB1	0.019619
SCML4	0.019607
STAM2	-0.019558
DBP	0.019556
FERMT1	-0.019555
ZNF818P	-0.019547
KLK14	0.019530
SUSD2	0.019524
RAPH1	-0.019520
LPXN	-0.019494
DYNC1I2	-0.019489
MSANTD3	-0.019471
COBLL1	0.019452
ATG16L1	-0.019427
SYT8	0.019408
EPCAM	0.019334
CD248	-0.019333
GAB3	-0.019325
CST9	0.019323
KIAA1841	-0.019321
SECISBP2L	-0.019249
BCORP1	0.019242
PPP1R3B	-0.019238
MBOAT2	-0.019231
EML1	-0.019200
SLITRK6	-0.019173
GPD1L	0.019149
TP53RK	-0.019134
CEBPD	0.019128
LIFR	0.019120
OLFML3	-0.019106
SEPT7	-0.019088
TTC7B	-0.019061
IER3	-0.019056
EPB41L2	-0.019029
TDRD5	0.019026
SPARC	-0.019002
SLC16A7	0.019000
PCSK1	0.018967
IFIH1	0.018958
RBMS1	-0.018953
ZNF876P	0.018950
HEPHL1	-0.018943
ERVFRD-1	-0.018898
DAPK2	0.018889
LRRC4B	-0.018885
H3F3B	-0.018870
TMEM229B	0.018854
ETV4	-0.018853
RBM27	-0.018852
DSG3	0.018828
OR13C4	0.018813
CYP4B1	0.018809
GK3P	-0.018794
ZBTB16	0.018793
GCSAM	0.018777
H1FNT	0.018772
SYNE2	0.018769
CXCL8	-0.018767
MIR138-1	-0.018760
UBA7	0.018750
DDX10	-0.018750
DDX60	-0.018687
EXOC6B	-0.018663
TBC1D30	0.018656
LOXL2	-0.018656
GNE	-0.018649
UBQLN3	0.018621
SNORD61	-0.018605
IL1R2	0.018602
TEFM	0.018589
IWS1	-0.018550
ZNF564	-0.018534
NOX4	0.018528
RASAL2	-0.018514
C11orf1	0.018508
FOXA2	-0.018496
SLC7A2	0.018423
TMEM229A	-0.018412
RARRES3	0.018409
LIPH	-0.018407
WDR47	-0.018397
TIAM1	-0.018367
CNGA2	-0.018354
DENND2D	0.018353
COL6A3	-0.018346
SNORA20	0.018341
MTHFS	0.018319
NMI	0.018309
MIR137HG	-0.018298
CYP4F12	0.018291
MAP2K6	0.018282
SNORA74A	0.018281
SLC22A31	-0.018272
HSPA13	-0.018269
SAMSN1	-0.018261
HLA-F	0.018260
RGAG1	0.018259
THUMPD3-AS1	-0.018251
RALGAPA2	0.018224
MUCL1	0.018214
GJC3	-0.018211
FLJ30679	0.018187
MGLL	-0.018166
C1orf21	0.018144
APOL2	0.018136
LOC441601	-0.018135
C5orf24	-0.018135
ST3GAL1	-0.018124
OR2L8	0.018123
ST3GAL6	0.018101
KIF14	-0.018098
MSRB1	0.018091
STRA6	-0.018083
PIWIL4	0.018064
ADAP1	0.018062
FOSL1	-0.018045
CDCA7L	0.018039
DUSP6	-0.018037
ABO	-0.018013
ZSWIM6	-0.017985
LOC100506271	-0.017958
SESN1	0.017956
TPRG1	0.017943
IFITM2	0.017929
C5orf15	-0.017928
GPR146	0.017922
DUXA	0.017908
HIST3H2A	0.017904
CCBE1	-0.017887
PLA2G10	0.017883
ESPL1	-0.017859
CATSPER4	0.017857
AHR	0.017851
PRODH	0.017845
PAIP2B	0.017840
TBC1D2B	0.017833
PCDHB2	-0.017833
THBD	-0.017812
AXL	-0.017794
KLF6	-0.017785
CABS1	0.017784
ADAM21	0.017781
SPINK1	-0.017774
PSMB8	0.017766
FAM177A1	-0.017748
UBE2N	-0.017725
RITA1	0.017724
MROH6	0.017724
NR1H3	0.017716
BRIP1	-0.017711
MIR516B1	-0.017708
FAM47A	0.017663
MAGEA12	-0.017661
SNORD14E	-0.017652
PDGFRL	0.017651
RAPGEF2	-0.017648
SLC28A3	0.017646
MAP3K5	0.017639
CA8	0.017636
TMSB4X	-0.017613
MIRLET7F2	0.017598
SNORA49	0.017582
XAGE-4	-0.017576
CA12	-0.017548
GPR141	0.017546
CCDC64	0.017544
TACC1	-0.017540
DHRS13	0.017533
PCDHB9	0.017531
PTHLH	-0.017529
USP18	0.017524
RPGR	-0.017521
ZNF204P	0.017497
FHOD3	-0.017495
ZNF300	-0.017491
SLC44A3	0.017450
NIPAL1	-0.017443
CD24	-0.017440
C5orf38	0.017415