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GEN3VA Reports for these tags

PATHOGENS_BD2K_LINCS_DCIC_COURSERA

SOFT file
Title / Description PBMCs exposed to the Mycobacterium tuberculosis H37Ra strain
Accession GSE16250
Summary Human peripheral blood mononuclear cells were cultured in presence of H37Ra strain at 37oC, 5%CO2. Cellular aggregates were collected at 24h, and RNA extracted and hybridized to Affymetrix microarrays (HG-U133). Raw data from microarray experiments was analyzed with dCHIP and SAM programs to determine the significance of changes at the biological context.
Organism Homo sapiens
Platform GPL570
Normalized False
Parsed SOFT file
Metadata
Differential expression method Characteristic Direction
Cutoff 500
Microbe_id 1773
Microbe_name Mycobacterium tuberculosis
Cell_type PBMC
Organism human
Visualizations
Principal Component Analysis
Hierarchical clustering
External Links and Downloads
Gene lists Enrichr L1000CDS2 PAEA Crowdsourcing
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