Gene signatures

Signatures (58) and Custom Report Builder
Title Organism Platform
1 torin-1
2 prostratin
3 NFKB-activation-inhibitor-II
4 rottlerin
5 BRD-K86574132
6 resveratrol
7 narciclasine
8 tyrphostin
9 brazilin
10 mitoxantrone
11 rotenone
12 curcumin
13 brefeldin-a
14 isosilychristin
15 isosilybin a
16 silybin a-7-o-beta-d-glucuronide
17 silybin b-7-o-beta-d-glucuronide
18 silybin b
19 isosilybin b
20 silibinin
21 quercetin
22 silybin b-4''-o-beta-d-glucuronide
23 sirolimus
24 troglitazone
25 homoharringtonine
26 cucurbitacin-i
27 thapsigargin
28 WYE-125132
29 AG-957
30 BRD-K05649647
31 metformin
32 TPCA-1
33 LDN-193189
34 alvocidib
35 epigallocatechin
36 silybin a-4''-o-beta-d-glucuronide
37 silibinin
38 tanespimycin
39 isosilybin b-7-o-beta-d-glucuronide
40 isosilybin a-7-o-beta-d-glucuronide
41 BMS-387032
42 silydianin
43 isosilybin b-4''-o-beta-d-glucuronide
44 taxifolin
45 isosilybin a-4''-o-beta-d-glucuronide
46 PD-198306
47 oligomycin-a
48 silychristin
49 daunorubicin
50 BRD-K97808269
51 CD-1530
52 vorinostat
53 jg-98
54 arbidol
55 silibinin-2',3-dihydrogensuccinate sodium salt
56 withaferin-a
57 acadesine
58 GSK-2126458

PCA

Interactive 3D principal component analysis of gene signatures. You can rotate the visualization and mouse over the data points.

Genes

Hierarchical clustering of genes based on weights from the differential expression method.

Enrichr

Enrichr is a web tool that performs gene set enrichment analysis. To generate the hierarchical clusterings below, GEN3VA enriched each gene signature using Enrichr and then clustered the terms. Use the select button to change Enrichr's background library.

Hierarchical clustering of enriched terms from

L1000CDS2

L1000CDS2 is a web tool that queries the LINCS L1000 dataset to identify small molecules that can reverse or mimic the observed input expression pattern. To generate the hierarchical clustering below, GEN3VA enriched each gene signature using L1000CDS2 to generate a list of perturbations that either mimic (red) and reverse (blue) expression.