A2MP1 Gene

Name alpha-2-macroglobulin pseudogene 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent genetic studies of late‐onset Alzheimer’s disease (AD) have underscored the importance of amyloid‐beta (Aβ) clearance pathways. In one investigation of multiplex Caucasian families and independent case–control cohorts, ACE showed robust haplotype effects and, when considered in combination with other candidate genes such as Alpha‐2‑Macroglobulin (A2M)—a molecule that mediates the clearance of Aβ—the data suggest that this axis of interacting genes may influence AD susceptibility. Although the study did not conclusively map all gene–gene interactions in independent samples, the involvement of A2M (here considered in the context of the gene family that includes A2MP1) points to a potential role in modulating the clearance of neurotoxic Aβ peptides that accumulate in vulnerable brain regions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}, {"type": "p", "children": [{"type": "t", "text": "\nIn related work on transcriptional regulation, although A2MP1 was not specifically mentioned, the findings emphasize the complex control of gene expression by mechanisms such as histone tail–mediated repression. In this study, deletion of histone H3 or H4 tails led to unscheduled activation of Snf1‐dependent genes under normally repressive conditions, demonstrating how a permissive chromatin state can override classical regulatory pathways. This detailed portrayal of transcription factor binding and chromatin remodeling provides additional insight into how regulatory perturbations may indirectly affect genes involved in critical pathways, such as the clearance of Aβ peptides, and thus may ultimately connect to the pathophysiology of AD."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}]}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Todd L Edwards, Margaret Pericak-Vance, Johnny R Gilbert, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An association analysis of Alzheimer disease candidate genes detects an ancestral risk haplotype clade in ACE and putative multilocus association between ACE, A2M, and LRRTM3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Med Genet B Neuropsychiatr Genet (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ajmg.b.30899"}], "href": "https://doi.org/10.1002/ajmg.b.30899"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19105203"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19105203"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Juan J Infante, G Lynn Law, I-Ting Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Activator-independent transcription of Snf1-dependent genes in mutants lacking histone tails."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Microbiol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/j.1365-2958.2011.07583.x"}], "href": "https://doi.org/10.1111/j.1365-2958.2011.07583.x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21338416"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21338416"}]}]}]}
Synonyms A2MP
NCBI Gene ID 3
API
Download Associations
Predicted Functions View A2MP1's ARCHS4 Predicted Functions.
Co-expressed Genes View A2MP1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View A2MP1's ARCHS4 Predicted Functions.

Functional Associations

A2MP1 has 722 functional associations with biological entities spanning 5 categories (molecular profile, disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.

Click the + buttons to view associations for A2MP1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of A2MP1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of A2MP1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at A2MP1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of A2MP1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of A2MP1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GAD Gene-Disease Associations diseases associated with A2MP1 gene in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with A2MP1 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of A2MP1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of A2MP1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with A2MP1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
GWASdb SNP-Disease Associations diseases associated with A2MP1 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with A2MP1 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with A2MP1 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of A2MP1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of A2MP1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at A2MP1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.