ABCC6P1 Gene

HGNC Family Functional pseudogenes
Name ATP-binding cassette, sub-family C, member 6 pseudogene 1 (functional)
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nPseudogenes, once dismissed as genomic relics, are now recognized as potentially active regulators of gene expression. Recent studies on ATP-binding cassette (ABC) transporter pseudogenes have shed light on this phenomenon, demonstrating that some pseudogenes are robustly transcribed across multiple tissues. In this context, ABCC6P1 appears to be among those ubiquitously active transcripts, suggesting that—despite lacking the capacity to encode functional proteins—it may nonetheless contribute to cellular processes by serving a regulatory role."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "Emerging evidence indicates that transcriptionally active ABC transporter pseudogenes can partake in a regulatory interplay with their parent genes. Specifically, in the comprehensive inventory of ABC transporter pseudogenes, transcripts such as ABCC6P1 are thought to modulate the expression of their protein‐coding counterparts, potentially through mechanisms like RNA sequestration, competitive binding of microRNAs, or involvement in transcriptional feedback loops. Such regulatory interdependencies could influence the cellular abundance and activity of key transporters, thereby impacting diverse physiological processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "Ultimately, these findings underscore the functional significance of pseudogenes like ABCC6P1 in human biology. Beyond being mere evolutionary remnants, they may actively participate in the fine-tuning of gene regulatory networks, offering new perspectives on how gene expression is orchestrated and how perturbations in these subtler layers of regulation might contribute to disease."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Armin P Piehler, Marit Hellum, Jürgen J Wenzel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The human ABC transporter pseudogene family: Evidence for transcription and gene-pseudogene interference."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Genomics (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1471-2164-9-165"}], "href": "https://doi.org/10.1186/1471-2164-9-165"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18405356"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18405356"}]}]}]}
NCBI Gene ID 653190
API
Download Associations
Predicted Functions View ABCC6P1's ARCHS4 Predicted Functions.
Co-expressed Genes View ABCC6P1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View ABCC6P1's ARCHS4 Predicted Functions.

Functional Associations

ABCC6P1 has 1,235 functional associations with biological entities spanning 5 categories (molecular profile, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 17 datasets.

Click the + buttons to view associations for ABCC6P1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of ABCC6P1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at ABCC6P1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of ABCC6P1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of ABCC6P1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with ABCC6P1 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of ABCC6P1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of ABCC6P1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of ABCC6P1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of ABCC6P1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of ABCC6P1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of ABCC6P1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of ABCC6P1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of ABCC6P1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of ABCC6P1 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of ABCC6P1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at ABCC6P1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of ABCC6P1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.