| Name | apolipoprotein C-I pseudogene 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nLong non‐coding RNA APOC1P1 has emerged as a critical regulatory molecule in cancer. In breast cancer, the APOC1P1-3 transcript is markedly overexpressed, a phenomenon that is associated with larger tumor size and hypomethylation of its promoter region. Mechanistically, APOC1P1-3 directly binds to tubulin, leading to decreased α-tubulin acetylation, subsequent inactivation of caspase-3, and ultimately inhibition of apoptosis. This anti‐apoptotic function suggests that APOC1P1-3 contributes to tumor cell survival."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "Renal cell carcinoma studies further implicate APOC1P1 as an oncogenic factor. In clear cell renal cell carcinoma (ccRCC), APOC1P1 expression is significantly elevated compared to normal kidney tissues, with even higher levels observed in advanced tumor grades and stages. Functional experiments demonstrate that knockdown of APOC1P1 suppresses cell proliferation, impedes migration and invasion, promotes apoptosis, and induces G1/S cell cycle arrest, collectively underscoring its role in driving tumor progression and its potential as a prognostic biomarker and therapeutic target."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "In addition to its functional roles in tumorigenesis, APOC1P1 also exhibits strong diagnostic promise. Analysis of breast tumor samples reveals that APOC1P1, together with other long non-coding RNAs such as AK058003, is significantly overexpressed in tumor tissues relative to adjacent non-tumor tissues, further supporting its potential utility as a biomarker for early cancer detection."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "X-H Liao, J-G Wang, L-Y Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long intergenic non-coding RNA APOC1P1-3 inhibits apoptosis by decreasing α-tubulin acetylation in breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/cddis.2016.142"}], "href": "https://doi.org/10.1038/cddis.2016.142"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27228351"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27228351"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Chong Sun, Zhonghan Zhou, Haoqing Shi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of Long Noncoding RNA APOC1P1 as an Oncogene in Clear Cell Renal Cell Carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dis Markers (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2019/2814058"}], "href": "https://doi.org/10.1155/2019/2814058"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31871500"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31871500"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Ali Rajabi, Ali Saber, Sepehr Abdolahi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expression of lncRNAs AK058003 and APOC1P1 in breast cancer patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleosides Nucleotides Nucleic Acids (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/15257770.2022.2075556"}], "href": "https://doi.org/10.1080/15257770.2022.2075556"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35580209"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35580209"}]}]}]}
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| NCBI Gene ID | 342 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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APOC1P1 has 1,068 functional associations with biological entities spanning 4 categories (molecular profile, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 19 datasets.
Click the + buttons to view associations for APOC1P1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of APOC1P1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of APOC1P1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with APOC1P1 gene from the CellMarker Gene-Cell Type Associations dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of APOC1P1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| dbGAP Gene-Trait Associations | traits associated with APOC1P1 gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at APOC1P1 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of APOC1P1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of APOC1P1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of APOC1P1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of APOC1P1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| GWAS Catalog SNP-Phenotype Associations | phenotypes associated with APOC1P1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with APOC1P1 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with APOC1P1 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of APOC1P1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of APOC1P1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of APOC1P1 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of APOC1P1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at APOC1P1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of APOC1P1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |