| Name | chromosome 19 open reading frame 84 |
| Description | Predicted to be involved in transposable element silencing by piRNA-mediated DNA methylation. Predicted to be located in nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nC19orf84 is an evolutionarily conserved protein that plays an essential role in orchestrating piRNA‐directed de novo DNA methylation, a key epigenetic process required for transposon silencing in the male germ line. In fetal gonocytes, C19orf84 interacts directly with SPOCD1 and associates with the DNA methyltransferase DNMT3C to facilitate the methylation of young, active transposons. This interaction is critical for establishing proper transposon repression, and loss‐of‐function variants affecting SPOCD1 (and consequently its interaction with C19orf84) result in defective transposon silencing and lead to male infertility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nThus, C19orf84 emerges as an indispensable component of the piRNA pathway, mediating the physical connection between transposon‐targeting factors and the de novo methylation machinery. Its function is crucial for maintaining genome stability in the male germ line and ensuring proper spermatogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ansgar Zoch, Gabriela Konieczny, Tania Auchynnikava, et al. "}, {"type": "b", "children": [{"type": "t", "text": "C19ORF84 connects piRNA and DNA methylation machineries to defend the mammalian germ line."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molcel.2024.01.014"}], "href": "https://doi.org/10.1016/j.molcel.2024.01.014"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38359823"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38359823"}]}]}]}
|
| Synonyms | C19orf84 |
| Proteins | CS084_HUMAN |
| NCBI Gene ID | 147646 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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C19ORF84 has 690 functional associations with biological entities spanning 6 categories (disease, phenotype or trait, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 15 datasets.
Click the + buttons to view associations for C19ORF84 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of C19ORF84 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of C19ORF84 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with C19ORF84 gene from the CellMarker Gene-Cell Type Associations dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of C19ORF84 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| DepMap CRISPR Gene Dependency | cell lines with fitness changed by C19ORF84 gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with C19ORF84 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of C19ORF84 gene from the GTEx eQTL 2025 dataset. | |
| HPA Tissue Gene Expression Profiles | tissues with high or low expression of C19ORF84 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset. | |
| HPA Tissue Protein Expression Profiles | tissues with high or low expression of C19ORF84 protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of C19ORF84 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Reactome Pathways 2024 | pathways involving C19ORF84 protein from the Reactome Pathways 2024 dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of C19ORF84 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of C19ORF84 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of C19ORF84 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| TargetScan Predicted Nonconserved microRNA Targets | microRNAs regulating expression of C19ORF84 gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset. | |