CECR7 Gene

Name cat eye syndrome chromosome region, candidate 7 (non-protein coding)
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n CECR7 is a chimeric transcription unit located in the cat eye syndrome (CES) critical region on chromosome 22q and appears to have arisen through the integration of multiple duplicons in pericentromeric DNA."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Expression of CECR7 has been detected in human and gorilla fibroblasts, although its expression in orangutans was not apparent, suggesting that its activation occurred early in primate evolution but may be subject to species‐specific silencing (1). In the context of developmental abnormalities, analyses employing fluorescence in situ hybridization (FISH) in prenatal samples have demonstrated that CECR7 is not present on certain marker chromosomes derived from 22q11, implying that rearrangements affecting dosage of the region may spare CECR7 or alter its regulation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In cancer studies, differential methylation patterns affecting the first exon of CECR7 have been identified in mucosa adjacent to colorectal cancer compared to normal tissue, indicating that epigenetic regulation of this gene may be involved in tumorigenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Moreover, CECR7 has emerged as a component of competing endogenous RNA (ceRNA) networks in hepatocellular carcinoma and pancreatic cancer, where its interaction with microRNAs (notably hsa‐miR‐429) appears linked to the regulation of key immune and growth‐modulatory factors such as CTLA4. The inclusion of CECR7 in these networks and its significant association with overall survival in hepatocellular carcinoma patients suggest that it may serve as a prognostic biomarker and participate in the modulation of oncogenic pathways."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Although its precise biological function remains to be fully elucidated, the available evidence points to a role for CECR7 in both developmental disorders, as evidenced by its location within the CES region, and in cancer, through its involvement in regulatory RNA networks. Ongoing studies into its epigenetic modifications and interactions with microRNAs may help further clarify the mechanisms by which CECR7 influences gene expression in both normal development and disease.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Lindsay Bridgland, Tim K Footz, Melanie D Kardel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Three duplicons form a novel chimeric transcription unit in the pericentromeric region of chromosome 22q11."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Genet (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00439-002-0827-y"}], "href": "https://doi.org/10.1007/s00439-002-0827-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12483300"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12483300"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "T K Footz, P Brinkman-Mills, G S Banting, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genome Res (2001)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/gr.154901"}], "href": "https://doi.org/10.1101/gr.154901"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11381032"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11381032"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Chyi-Chyang Lin, Yao-Yuan Hsieh, Chung-Hsing Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Prenatal detection and characterization of a small supernumerary marker chromosome (sSMC) derived from chromosome 22 with apparently normal phenotype."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Prenat Diagn (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/pd.1520"}], "href": "https://doi.org/10.1002/pd.1520"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16915592"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16915592"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Chih-Ping Chen, Tsang-Ming Ko, Yi-Yung Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Prenatal diagnosis and molecular cytogenetic characterization of mosaicism for a small supernumerary marker chromosome derived from chromosome 22 associated with cat eye syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.gene.2013.05.061"}], "href": "https://doi.org/10.1016/j.gene.2013.05.061"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23747353"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23747353"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Yi-min Zhu, Jie Lin, Qiong Huang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "[Screening the differentially methylated DNA sequences of colorectal cancer by methylated CpG islands amplification coupled with representational difference analysis]."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Zhonghua Yi Xue Yi Chuan Xue Za Zhi (2003)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14556198"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14556198"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Kanyu Yao, Qi Wang, Jianhua Jia, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A competing endogenous RNA network identifies novel mRNA, miRNA and lncRNA markers for the prognosis of diabetic pancreatic cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Tumour Biol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1177/1010428317707882"}], "href": "https://doi.org/10.1177/1010428317707882"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28639886"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28639886"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Jian Zhang, Dahua Fan, Zhixiang Jian, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0141042"}], "href": "https://doi.org/10.1371/journal.pone.0141042"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26492393"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26492393"}]}]}]}
Synonyms SAHL1, CYCL
NCBI Gene ID 100130418
API
Download Associations
Predicted Functions View CECR7's ARCHS4 Predicted Functions.
Co-expressed Genes View CECR7's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CECR7's ARCHS4 Predicted Functions.

Functional Associations

CECR7 has 1,559 functional associations with biological entities spanning 7 categories (molecular profile, organism, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 25 datasets.

Click the + buttons to view associations for CECR7 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of CECR7 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of CECR7 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of CECR7 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of CECR7 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of CECR7 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of CECR7 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at CECR7 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of CECR7 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of CECR7 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GDSC Cell Line Gene Expression Profiles cell lines with high or low expression of CECR7 gene relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with CECR7 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing CECR7 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of CECR7 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of CECR7 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of CECR7 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of CECR7 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of CECR7 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of CECR7 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of CECR7 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of CECR7 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of CECR7 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of CECR7 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain CECR7 protein from the LOCATE Predicted Protein Localization Annotations dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at CECR7 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of CECR7 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.