CHCHD2P9 Gene

Name	coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 9
Description	Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in mitochondrion organization and positive regulation of transcription by RNA polymerase II. Predicted to be active in mitochondrion and nucleus. [provided by Alliance of Genome Resources, Mar 2025]
Synonyms	C9ORF49, CHCHD9
Proteins	CHCH9_HUMAN
NCBI Gene ID	645345
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Predicted Functions
Co-expressed Genes
Expression in Tissues and Cell Lines

Functional Associations

CHCHD2P9 has 771 functional associations with biological entities spanning 6 categories (molecular profile, functional term, phrase or reference, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 20 datasets.

Click the + buttons to view associations for CHCHD2P9 from the datasets below.

If available, associations are ranked by standardized value

Harmonizome 3.0

CHCHD2P9 Gene

Functional Associations

Please acknowledge the Harmonizome in your publications by citing the following reference(s):

	Dataset	Summary
	ChEA Transcription Factor Binding Site Profiles	transcription factor binding site profiles with transcription factor binding evidence at the promoter of CHCHD2P9 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
	ChEA Transcription Factor Targets	transcription factors binding the promoter of CHCHD2P9 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
	COMPARTMENTS Curated Protein Localization Evidence Scores	cellular components containing CHCHD2P9 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.
	DeepCoverMOA Drug Mechanisms of Action	small molecule perturbations with high or low expression of CHCHD2P9 protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset.
	DISEASES Experimental Gene-Disease Association Evidence Scores	diseases associated with CHCHD2P9 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores dataset.
	DISEASES Text-mining Gene-Disease Association Evidence Scores	diseases co-occuring with CHCHD2P9 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset.
	GAD Gene-Disease Associations	diseases associated with CHCHD2P9 gene in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.
	GO Biological Process Annotations 2023	biological processes involving CHCHD2P9 gene from the curated GO Biological Process Annotations 2023 dataset.
	GO Cellular Component Annotations 2023	cellular components containing CHCHD2P9 protein from the curated GO Cellular Component Annotations 2023 dataset.
	GO Molecular Function Annotations 2023	molecular functions performed by CHCHD2P9 gene from the curated GO Molecular Function Annotations 2023 dataset.
	GTEx Tissue Gene Expression Profiles	tissues with high or low expression of CHCHD2P9 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
	GTEx Tissue Sample Gene Expression Profiles	tissue samples with high or low expression of CHCHD2P9 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
	HuGE Navigator Gene-Phenotype Associations	phenotypes associated with CHCHD2P9 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
	IMPC Knockout Mouse Phenotypes	phenotypes of mice caused by CHCHD2P9 gene knockout from the IMPC Knockout Mouse Phenotypes dataset.
	LOCATE Predicted Protein Localization Annotations	cellular components predicted to contain CHCHD2P9 protein from the LOCATE Predicted Protein Localization Annotations dataset.
	MGI Mouse Phenotype Associations 2023	phenotypes of transgenic mice caused by CHCHD2P9 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
	NURSA Protein Complexes	protein complexs containing CHCHD2P9 protein recovered by IP-MS from the NURSA Protein Complexes dataset.
	Pathway Commons Protein-Protein Interactions	interacting proteins for CHCHD2P9 from the Pathway Commons Protein-Protein Interactions dataset.
	TISSUES Experimental Tissue Protein Expression Evidence Scores	tissues with high expression of CHCHD2P9 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores dataset.
	TISSUES Text-mining Tissue Protein Expression Evidence Scores	tissues co-occuring with CHCHD2P9 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.